| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3456 |
|---|
| Symbol | |
|---|
| ID | 5194212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3859715 |
|---|
| End bp | 3860152 |
|---|
| Gene Length | 438 bp |
|---|
| Protein Length | 145 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640587904 |
|---|
| Product | DoxX family protein |
|---|
| Protein accession | YP_001268766 |
|---|
| Protein GI | 148548664 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2259] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000181472 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA CTACCCTCAA CGCGCTGTTC TCTACACGTG CTGGCGCTGG CTTGAGCGTT
ATCCGCATCC TGGTCGGCAT CATCTTCATG GCTCATGGTG CGCAAAAACT CTTCGGCCTA
TTCGGTGGCT ACGGCCTGGA AGGCACCGGC CAATGGATGG AAAGCATCGG CCTGGCGCCG
GGTTATCTGA TGGCCCTGCT GTCCGGCAGT GCCGAATTCT TCGGCGGCCT GGCCTTGGTG
GTCGGCCTGC TGGCTCGCCC GGCGGCCCTG GCGCTGACGG TGACCTTGGT AGTGGCGATC
GTTTCGGTGC ACATCGGCAA CGGCCTGTTC ATGTCCAACA ACGGCTATGA GTTCGCCCTG
GCGCTGTTGG CCGGCACTGT TGCAGTCATG ATCGAAGGCG CTGGCCGCTT CTCGCTCGAC
CGCCTGATCG CCCGGTAA
|
|---|
| Protein sequence | MKNTTLNALF STRAGAGLSV IRILVGIIFM AHGAQKLFGL FGGYGLEGTG QWMESIGLAP
GYLMALLSGS AEFFGGLALV VGLLARPAAL ALTVTLVVAI VSVHIGNGLF MSNNGYEFAL
ALLAGTVAVM IEGAGRFSLD RLIAR
|
|---|
| |