| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3454 |
|---|
| Symbol | greB |
|---|
| ID | 5194613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3858658 |
|---|
| End bp | 3859146 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640587902 |
|---|
| Product | transcription elongation factor GreB |
|---|
| Protein accession | YP_001268764 |
|---|
| Protein GI | 148548662 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0782] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01461] transcription elongation factor GreB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000036573 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | TTGAGCACCA ATATCATCAC CACAGAAGGC CATGAGGCGC TGAAGAAAGA GCTGGACCAC
CTGTGGCGGG TGTATCGTCC GGAAATCACC CAAAAGGTTG CCTGGGCCGC TTCGTTGGGT
GACCGCAGCG AGAACGCGGA CTACCAGTAC AACAAGAAGC TGCTGCGCGA AATCGACCGC
AGGGTGCGAT ACCTGCGCAA GCGGCTTGAA GATGTGAAAG TGGTGGCGTA CTCGCCCGAG
CAGGAAGGCA GAGTGTTTTT TGGTGCCTGG GTTGAGATCG AGAACGACGA CGGCGAGACC
ATGAAGTTTC GCATTGTCGG CTACGACGAG ATCTACGGGC GCAACGATTA CATCTCGATC
GATTCGCCCA TGGCCCGTGC CTTGCTGAAG AAGGAGGAGG GTGATGAGGT GGTGGTGCAT
ACACCTACCG GTGAAGCGAC CTGGTATGTG AGCAGCATCC GTTACGGCCA GTCAGTTTCG
ACGGACTGA
|
|---|
| Protein sequence | MSTNIITTEG HEALKKELDH LWRVYRPEIT QKVAWAASLG DRSENADYQY NKKLLREIDR
RVRYLRKRLE DVKVVAYSPE QEGRVFFGAW VEIENDDGET MKFRIVGYDE IYGRNDYISI
DSPMARALLK KEEGDEVVVH TPTGEATWYV SSIRYGQSVS TD
|
|---|
| |