| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3446 |
|---|
| Symbol | |
|---|
| ID | 5193867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3851028 |
|---|
| End bp | 3852104 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640587894 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_001268756 |
|---|
| Protein GI | 148548654 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000202936 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000968974 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGATT TACCGATCGA TGACTTGAAC GTTGCCTCCA ACGAGACCCT GATCACCCCT
GATCAGCTCA AGAAGGAAAT CCCCCTCAGC GCCAAGGCCC TGCAGACCGT GACTGCCGGC
CGTGAAGTGG TGCGCAATAT TCTCGACGGC AAGGACCATC GCCTGTTCGT CGTGGTCGGC
CCTTGCTCCA TCCACGACAT CAAGGCAGCC CACGAATACG CCGAGCGCTT GAAAGTGCTG
GCCGAAGAAG TGTCCGATAC GCTGTACCTG GTCATGCGCG TGTACTTCGA AAAGCCGCGC
ACCACCGTCG GCTGGAAAGG CCTGATCAAC GATCCGTACC TGGATGACTC GTTCAAGATC
CAGGACGGCC TGCACATCGG CCGCAAGCTG CTGCTGGACC TGGCCGAAAT GGGCCTGCCG
ACTGCCACCG AAGCGCTCGA CCCGATTTCC CCGCAGTACC TGCAAGACCT GATCAGCTGG
TCGGCCATCG GTGCCCGCAC CACCGAATCG CAAACACACC GCGAGATGGC CTCGGGCCTG
TCCTCGGCGG TGGGTTTCAA GAACGGCACC GACGGCGGCC TGACCGTTGC CATCAATGCC
CTGCAGTCGG TGTCCAAGCC GCACCGCTTC CTGGGCATCA ACCAGGAAGG CGGCGTGTCG
ATCGTCACCA CCAAGGGCAA CCCATACGGC CACGTGGTAC TGCGCGGCGG CAATGGCAAG
CCGAACTACG ACTCGGTCAG CGTCGCCCTG TGCGAACAGG ACCTGGCCAA GGCCAAGATC
AAGGCCAACA TCATGGTCGA CTGCAGCCAT GCCAACTCCA ACAAGGACCC GGCCCTGCAA
CCGCTGGTGA TGGAGAACGT CGCCAACCAG ATTCTCGAAG GCAACCAGTC GATCATCGGC
CTGATGGTCG AAAGCCACCT GAACTGGGGC TGTCAGTCCA TTCCGAAAAA CCTGGACGAG
TTGCAGTATG GCGTGTCGAT CACGGACGCC TGCATCGACT GGTCGGCGAC CGAGAAAACC
CTGCGCAGCA TGCATGCCAA GCTCAAGGAT GTGCTGCCGC AGCGTAAGCG CGGCTGA
|
|---|
| Protein sequence | MADLPIDDLN VASNETLITP DQLKKEIPLS AKALQTVTAG REVVRNILDG KDHRLFVVVG
PCSIHDIKAA HEYAERLKVL AEEVSDTLYL VMRVYFEKPR TTVGWKGLIN DPYLDDSFKI
QDGLHIGRKL LLDLAEMGLP TATEALDPIS PQYLQDLISW SAIGARTTES QTHREMASGL
SSAVGFKNGT DGGLTVAINA LQSVSKPHRF LGINQEGGVS IVTTKGNPYG HVVLRGGNGK
PNYDSVSVAL CEQDLAKAKI KANIMVDCSH ANSNKDPALQ PLVMENVANQ ILEGNQSIIG
LMVESHLNWG CQSIPKNLDE LQYGVSITDA CIDWSATEKT LRSMHAKLKD VLPQRKRG
|
|---|
| |