| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3432 |
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| Symbol | prpD |
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| ID | 5192189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3833686 |
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| End bp | 3835170 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640587880 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_001268742 |
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| Protein GI | 148548640 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.01192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.429713 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCA ACGTAGACCT CAATGACCGC CCGGACTACG ACCGGGTGCT ACAAACCCTG
GCCGATTATG CCCTCGGCTA CCGGGTCGAA TCCCGCGAGG CCCTGGACAC CGCGCGCAAC
TGCCTGATGG ACACCCTCGG CTGCGGCCTT CTCGCCTTGC GCTTCCCTGA GTGCACCAAG
CTCCTTGGTC CTCAGGTGGA AGGCACGCTG GTCCCGAATG GTGCTCGCGT CCCCGGCACC
TCCTATCGCC TCGACCCGGT CAAGGCCGCC TGGGACATTG GCTGCACGGT GCGCTGGCTG
GACTACAACG ACACCTGGCT GGCCGCCGAA TGGGCTCATC CCTCGGACAA CCTTGGCGGC
ATCCTGGCAG TGGCTGACCA CCTGTCACAG AAGCGTGTTG CCGCGGGTGA ACAGCCACTG
CTGATGCGTG ATGTGCTGGA GGCCATGGTC ATGGCGCATG AAATCCAGGG CGTACTGGCG
CTGGAAAACG CCTTCAACCG CGTCGGCCTC GATCACGTGA TTTTGGTGAA GGTCGCCTCG
ACCGCCGTAT GTGCCAGGCT GATGGGGGCC AATCGTGAGC AGATGCTCTC GGCCTTGTCC
CACGCCTTCG TCGACGGCCA GGCCCTTCGA ACCTATCGCC ACGCGCCCAA CGCCGGTTCG
CGCAAATCCT GGGCTGCGGG TGATGCCTCC AGCCGAGGTG TGCGCCTGGC CGACATCGCC
TTGCGCGGGG AGATGGGCGT GCCGGGCGTG CTCACGGCGT CGCAATGGGG GTTCTACGAT
GTTTCGTTCA GCCATACCAA CAAAGACCTG GCGCTCAAGC CCGCCGGGCA GTACGAGCTG
CGCCTGCCCC AGGCGTTGGG CAGCTATGTG ATGGAAAATG TGCTGTTCAA GGTCAGTTTC
CCTGCCGAGT TCCACGCCCA GACCGCCTGT GAGGCAGCAG TGATTCTGCA TCCACTTGTG
CGTAACCGCC TGCATGAAGT CGACCGCATC GTCATCACCA CCCAGGAGTC GGCGATCCGC
ATCATCTCCA AGAGCGGCCC GCTGGCCAAT GCCGCCGACC GTGACCACTG TCTGCAGTAC
ATGGTGGCCG TGCCGCTGAT CTTTGGCCAT TTGGTGGCCG AGCATTATGA GGACGCCTTC
CATGCCAACC ACCCCAGTAT CGACCGCCTG CGCGAGAAGA TGGAGGTGGT GGAAGACCCG
CGCTTCAGTC GCGAGTACCT GGAGCCGGAC AAGCGTTCGA TCGCCAACGC GCTGCAGGTG
TTCTTCAAGG ATGGCAGCAG CACCGAGCAA GTGGTGGTGG AATACCCGAT CGGGCATCGT
CGGCGGCGGG GGGAGGGGAT ACCGTTGCTG GAGGCCAAGT TCAGGGCCAA CCTGGCGACC
CGCTTTGCCC GGCAGCGGTG TCAGCAGGTT TTCGAACTGT GCAAGGACCA GCAGAAGCTG
GAAGGCACGG CTGTGCACAG GTTCGTGGAC TTGTTTGTGA TATGA
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| Protein sequence | MSANVDLNDR PDYDRVLQTL ADYALGYRVE SREALDTARN CLMDTLGCGL LALRFPECTK
LLGPQVEGTL VPNGARVPGT SYRLDPVKAA WDIGCTVRWL DYNDTWLAAE WAHPSDNLGG
ILAVADHLSQ KRVAAGEQPL LMRDVLEAMV MAHEIQGVLA LENAFNRVGL DHVILVKVAS
TAVCARLMGA NREQMLSALS HAFVDGQALR TYRHAPNAGS RKSWAAGDAS SRGVRLADIA
LRGEMGVPGV LTASQWGFYD VSFSHTNKDL ALKPAGQYEL RLPQALGSYV MENVLFKVSF
PAEFHAQTAC EAAVILHPLV RNRLHEVDRI VITTQESAIR IISKSGPLAN AADRDHCLQY
MVAVPLIFGH LVAEHYEDAF HANHPSIDRL REKMEVVEDP RFSREYLEPD KRSIANALQV
FFKDGSSTEQ VVVEYPIGHR RRRGEGIPLL EAKFRANLAT RFARQRCQQV FELCKDQQKL
EGTAVHRFVD LFVI
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