Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3398 |
Symbol | |
ID | 5193660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 3813463 |
End bp | 3814305 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640587846 |
Product | putative phage repressor |
Protein accession | YP_001268708 |
Protein GI | 148548606 |
COG category | [K] Transcription |
COG ID | [COG2932] Predicted transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0077186 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTACCG GACCCGAATT AGGTGCAGCC ATTGATGCTG CGCGGATCGC CAAGGGCGTA TCGAAGAAAC AGCTTGCAGA CGACTTCCAG GTGAAGCCTC CGTCGGTACA GGGCTGGGTG AAAAACGGCC GGATCGACAA GTCCAAGCTG ATGGACGTGA TCGCTTACTT TTCTGACGTT GTTGGTCCTG AGCACTGGGG GCTTCGCCCT GGCTTCTCCT ACGAGAGCAT CCAGGAGGTA ACTTCGGAAC CTGTCACAGA GACGGCGCCG ACCTCAGCTG CCGACATGGT TCGCGCCATG CTCGCCAAGC AAGGTAAGAA CTTGTCGGAT TCGGCGCGCG CGCAGTTGAT TGCAGCCGCC GAAGCGACCG ATGAGGGAAA TGTGATTACC GTAGACTTCA CCCGACCTGG CTTGGTCGGG GACGAGGTTC GGATCGCACA CTACGATATT CGCGCAGCAA TGGGTGGCGG CCAGCTCCCC CACGACTACC CGGAAATGCT CAAGGACATT CGCGTCAGCC CCAGCCACTT GCGGGAAATC GGCGTCGAGT TCGAAGAGCA CTACCACCTG AAGGTGGTCA CCGGCTGGGG CCAGTCGATG GAGCCCACCA TCAAACATCG CGACCCGCTG ATCGTGAATA TCAACGTCCG CGACTTCGTG GGCGATGGGG TGTACCTCTT CGTCTGGGAC GACCTGCTTT ACATCAAGCG CCTGCAGGTG GCTGATGAGG AGCACTACGA GATGATCTCG GACAACCCGC GGCACAAGGA TCGTCTAATC CGACGAGATA TGACCTACAT CCAAGCTCGG GTTCTGCTGG TGTGGAATGC ACATCTCGTT TGA
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Protein sequence | MLTGPELGAA IDAARIAKGV SKKQLADDFQ VKPPSVQGWV KNGRIDKSKL MDVIAYFSDV VGPEHWGLRP GFSYESIQEV TSEPVTETAP TSAADMVRAM LAKQGKNLSD SARAQLIAAA EATDEGNVIT VDFTRPGLVG DEVRIAHYDI RAAMGGGQLP HDYPEMLKDI RVSPSHLREI GVEFEEHYHL KVVTGWGQSM EPTIKHRDPL IVNINVRDFV GDGVYLFVWD DLLYIKRLQV ADEEHYEMIS DNPRHKDRLI RRDMTYIQAR VLLVWNAHLV
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