| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3320 |
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| Symbol | metH |
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| ID | 5194066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3736776 |
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| End bp | 3740483 |
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| Gene Length | 3708 bp |
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| Protein Length | 1235 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640587767 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001268630 |
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| Protein GI | 148548528 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.487541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACC GCAGCGCTCG TCTCCAAGCA CTCCAGAACG CACTCAAAGA GCGCATCCTG
ATCCTCGACG GCGGCATGGG TACTATGATC CAAAGCTACC GTCTGGAGGA ACACGACTAT
CGTGGCACGC GTTTTGCCGA TTGGCCAAGC GATGTGAAGG GTAACAACGA CTTGTTGCTG
CTCAGCCGCC CGGACGTGAT CGCCGCCATC GAGAAGGCCT ATCTGGATGC CGGTGCCGAT
ATTCTCGAAA CCAACACCTT CAACGCCACG CAGATTTCCC AGGCCGACTA CGGCATGGAG
TCGCTGGTTT ACGAGCTGAA CGTCGAAGGC GCGCGCATCG CTCGCCAGGT TGCCGATGCC
AAGACCCTGG AAACGCCGGA CAAGCCGCGC TTCGTTGCCG GCGTGCTCGG CCCTACCAGC
CGAACCTGTT CGATTTCCCC GGACGTCAAC GACCCTGGGT TCCGCAACGT CACCTTCGAC
GAGTTGGTAG AAAACTACAT CGAGGCCACC CGCGGCCTGA TCGAAGGCGG CGCCGACCTG
ATCCTGATCG AAACCATCTT CGACACCCTC AACGCCAAGG CGGCGATCTT CGCCGTGCAG
CAAGTGTTCG AGGACGACAA CGTCGAACTG CCGATCATGA TCTCCGGCAC CATCACCGAC
GCCTCCGGCC GTACCCTGTC GGGGCAGACC ACCGAAGCGT TCTGGAACTC GGTGCGCCAC
GCCAAGCCGA TTTCCGTGGG CCTGAACTGC GCCCTCGGCG CCAAGGACCT GCGCCCGTAT
CTGGAAGAGC TGGCCACCAA GGCCGACACC CACGTGTCCG CCCACCCCAA CGCAGGCCTG
CCGAACGCCT TCGGTGAGTA CGACGAAACC CCGGCCGAGA TGGCCGCGGT GGTCGAAGAA
TTCGCCGCCA GCGGTTTCCT CAACATCATC GGCGGTTGCT GCGGCACCAC CCCAGGCCAT
ATCCAGGCCA TTGCCGAAGC CGTGGCCAAG TACAAGCCGC GCGAGATCCC GGAAATCGCC
AAGGCCTGCC GCCTGTCGGG CCTGGAGCCG TTCACCATCG ACCGCCAGTC GCTGTTCGTC
AACGTCGGTG AGCGCACCAA TATCACCGGT TCCGCCAAAT TCGCCCGGCT GATCCGCGAA
GAGAACTATA CCGAAGCCTT GGAAGTCGCC CTGCAGCAAG TCGAGGCCGG CGCTCAGGTA
ATCGACATCA ACATGGACGA AGGGATGCTC GACTCCCAGG CGGCCATGGT CCGGTTCCTC
AACCTGATCG CGGGTGAGCC GGACATCTCG CGTGTACCGA TCATGATCGA CTCGTCCAAG
TGGGAAGTGA TCGAAGCCGG CCTCAAGTGC ATCCAGGGCA AGGGCATCGT CAACTCCATT
TCCATGAAGG AAGGCGTCGA GCAGTTCAAG CACCACGCCC GCCTGTGCAA GCGCTATGGC
GCTGCCGTGG TGGTCATGGC TTTCGACGAA GTCGGCCAGG CCGACACTGC CGCGCGCAAG
AAGGAAATCT GCCAGCGCAG CTATGACATC CTGGTCAACG AAGTGGGCTT CCCGCCAGAA
GACATCATCT TCGACCCGAA CATCTTCGCC GTCGCCACCG GTATCGAAGA GCACAACAAC
TACGCCGTCG ACTTCATCGA GGCCTGTGCC TATATCCGCG ACCACCTGCC CCACGCCCTG
AGCTCGGGTG GCGTGTCCAA CGTGTCGTTC TCGTTCCGTG GCAACAACCC GGTGCGTGAG
GCGATCCACT CGGTGTTCCT GTATCACGCC ATCCAGAACG GCCTGACCAT GGGTATCGTC
AACGCCGGCC AGCTGGAGAT CTACGACGAG ATCCCGGCCC AGCTGCGTGA AAAGGTCGAG
GACGTGGTGC TCAACCGCAC CCCGCATGGC ACCGATGCAC TGCTGGCCAT CGCCGACGAC
TACAAGGGTG GCGGCGCAAC CAAGGAAGTG GAAAACGAAG AGTGGCGCTC GCTGCCGGTG
GAAAAACGCC TGGAGCACGC GCTGGTCAAG GGCATCACCG CGTTCATCGT CGAAGACACC
GAAGAATGCC GCCAGCAGTG CGCGCGCCCT ATCGAAGTGA TCGAAGGCCC GCTGATGAAC
GGCATGAACG TGGTCGGCGA CCTGTTCGGC GCGGGCAAGA TGTTCCTGCC GCAGGTGGTC
AAGTCGGCCC GCGTCATGAA ACAGGCCGTT GCTCACCTGA TCCCCTTCAT CGAAGCCGAA
AAAGGCGACA AGCCGGAAGC CAAGGGCAAG ATCCTGATGG CCACGGTGAA AGGCGACGTG
CACGACATCG GCAAGAACAT TGTCGGCGTG GTGCTGGGCT GTAACGGATA CGACATCGTC
GACCTTGGCG TGATGGTGCC GGCGGAGAAG ATCCTGCAGA CAGCCCGCGA GCAGAAGTGC
GACATCATCG GCCTGTCCGG CCTGATTACC CCGTCGCTGG ACGAAATGGT CCACGTTGCC
CGCGAAATGC AGCGCCAGGG CTTCGAACTG CCGCTGATGA TCGGTGGCGC CACCACCTCC
AAGGCGCACA CGGCGGTCAA GATCGAGCCC AAGTACAGCA ACGACGCAGT CATCTACGTC
ACCGACGCTT CGCGCGCGGT CGGCGTGGCC ACCCAGTTGC TGTCCAAAGA ACTCAAGCCG
GGCTTCGTCG AGAAGACCCG CCTGGAATAC GTGGACGTGC GCGAGCGCAC CGCCAACCGC
AGCGCCCGCA CCGAGCGCCT CAGCTACGCC CAGGCGATCG CTGCCAAGCC GCAGTACGAC
TGGGCCAGCT ACCAGCCAGC GGTGCCCTCC TTCACCGGCG TCAAGGTGCT GGAAGACATC
GATTTGCGCA CCCTGGCCGA GTACATCGAC TGGACCCCGT TCTTCATCTC CTGGGACCTG
GCCGGCAAGT TCCCGCGCAT CCTCACCGAC GAGGTGGTTG GCGAGGCTGC TACGGCGCTG
TACAAGGATG CCCGCGAGAT GCTCGACAAG CTGATCGACG AGAAGCTGAT CAGCGCCCGC
GCGGTATTCG GCTTCTGGCC GGCCAACCAG GTGGCCGATG ACGACATCGA AGTCTACGGC
GAAGATGGCC AGGCACTGGC CACCCTGCAC CATCTGCGCC AGCAGACCAT CAAGCCGGAC
GGCAAGCCCA ACTGGTCGCT GGCCGACTTC GTCGCACCGA AAGACAGCGG CGTGACCGAC
TACGTAGGTG GTTTTATCAC CACCGCCGGC ATCGGTGCCG AGGAAGTGGC CAAGGCTTAC
CAGGACAAGG GCGACGACTA CAGCTCGATC ATGGTCAAGG CCCTGGCCGA CCGCCTGGCC
GAAGCCTGTG CCGAATGGCT GCACGAGCAG GTGCGTAAAG AGCACTGGGG CTATGCCCGC
GACGAACACC TGGACAACGA GGCGCTGATC AAGGAGCAGT ACAGCGGCAT CCGCCCTGCG
CCGGGCTACC CGGCCTGCCC CGACCACACC GAAAAGGAAA CCCTGTTCCG CCTGCTCGAT
GGCACCGCCA TCGGTGAGAC CGGGCCAAGC GGGGTGTACC TCACCGAGCA CTTCGCGATG
TTCCCGGCGG CGGCGGTCAG CGGCTGGTAC TTCGCCCACC CGCAGGCGAA GTATTTTGCC
GTAGGCAAGG TCGACAAGGA CCAGATCGAA CGTTACAGCG CACGCAAAGG CCAGGATATC
AGCGTAAGCG AGCGCTGGCT GGCGCCTAAC CTGGGGTATG ACAGCTAA
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| Protein sequence | MSDRSARLQA LQNALKERIL ILDGGMGTMI QSYRLEEHDY RGTRFADWPS DVKGNNDLLL
LSRPDVIAAI EKAYLDAGAD ILETNTFNAT QISQADYGME SLVYELNVEG ARIARQVADA
KTLETPDKPR FVAGVLGPTS RTCSISPDVN DPGFRNVTFD ELVENYIEAT RGLIEGGADL
ILIETIFDTL NAKAAIFAVQ QVFEDDNVEL PIMISGTITD ASGRTLSGQT TEAFWNSVRH
AKPISVGLNC ALGAKDLRPY LEELATKADT HVSAHPNAGL PNAFGEYDET PAEMAAVVEE
FAASGFLNII GGCCGTTPGH IQAIAEAVAK YKPREIPEIA KACRLSGLEP FTIDRQSLFV
NVGERTNITG SAKFARLIRE ENYTEALEVA LQQVEAGAQV IDINMDEGML DSQAAMVRFL
NLIAGEPDIS RVPIMIDSSK WEVIEAGLKC IQGKGIVNSI SMKEGVEQFK HHARLCKRYG
AAVVVMAFDE VGQADTAARK KEICQRSYDI LVNEVGFPPE DIIFDPNIFA VATGIEEHNN
YAVDFIEACA YIRDHLPHAL SSGGVSNVSF SFRGNNPVRE AIHSVFLYHA IQNGLTMGIV
NAGQLEIYDE IPAQLREKVE DVVLNRTPHG TDALLAIADD YKGGGATKEV ENEEWRSLPV
EKRLEHALVK GITAFIVEDT EECRQQCARP IEVIEGPLMN GMNVVGDLFG AGKMFLPQVV
KSARVMKQAV AHLIPFIEAE KGDKPEAKGK ILMATVKGDV HDIGKNIVGV VLGCNGYDIV
DLGVMVPAEK ILQTAREQKC DIIGLSGLIT PSLDEMVHVA REMQRQGFEL PLMIGGATTS
KAHTAVKIEP KYSNDAVIYV TDASRAVGVA TQLLSKELKP GFVEKTRLEY VDVRERTANR
SARTERLSYA QAIAAKPQYD WASYQPAVPS FTGVKVLEDI DLRTLAEYID WTPFFISWDL
AGKFPRILTD EVVGEAATAL YKDAREMLDK LIDEKLISAR AVFGFWPANQ VADDDIEVYG
EDGQALATLH HLRQQTIKPD GKPNWSLADF VAPKDSGVTD YVGGFITTAG IGAEEVAKAY
QDKGDDYSSI MVKALADRLA EACAEWLHEQ VRKEHWGYAR DEHLDNEALI KEQYSGIRPA
PGYPACPDHT EKETLFRLLD GTAIGETGPS GVYLTEHFAM FPAAAVSGWY FAHPQAKYFA
VGKVDKDQIE RYSARKGQDI SVSERWLAPN LGYDS
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