| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3303 |
|---|
| Symbol | |
|---|
| ID | 5195027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3720501 |
|---|
| End bp | 3721691 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640587750 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001268613 |
|---|
| Protein GI | 148548511 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.143004 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCAGA CATCTTCCGC ACCGGTGCTG GCTGCCAGCA ACGAACGTCT GCCCGTTGGC
GGGCTGCTGG CGCTGGCCAT GACCGGTTTC ATCGCCATCC TCAGCGAAAC CTTGCCGGCG
GGTTTGCTCG ACCAGATCGC CGATGGCATG CACATCAGCC AGGCCATGGC TGGGCAATGG
GTCACGGCGT ATGCCTTGGG CTCGTTACTG ACCGCCATCC CGTTGGTGAC ATTGACCCAA
GGCTGGTATC GGCGCCGGGC GCTGTTGCTG GCGATCATCG GCTTCGTGCT GTTCAACGGG
CTGACGGCCC TGTCGGACTC CAACAGCCTG ACCCTGGTGC TGCGCTTTTT CACGGGGGCT
GCGGCCGGCC TGGCATGGGG CCTGATCGCT GGCCATGCCC GGCGCATGGT GCCGGTACCG
TTGCAGGGCC GGGCCATGGC GCTGGCCATG CTCGGGCAGC CGATTGCCTT GTCGCTCGGC
TTGCCGATTG CGACCTGGCT GGGGGCAGGG TTGGGCTGGC GCGCGACGTT CGTGGTCGTC
ACGCTGGTGG CGTCGCTGCT GGTGGTATGG GTGTTGCGAT CCGTGCCGGA CTACCCGGGG
CAGGCTGCCG GCAAGCGCCC GGCGGCCATG CAGGTATTGC GCACGCCAGG GGTGTTGATC
GTATTGCTGG TGATCCTCAC CTGGATCCTT GGCCATAACA TCCTCTACAC CTATATCGTG
CCGTTGCTGG CGGCGGCTGG CATGGCTGCG GACATTGGCC CGGTGCTGAT GGTGTTTGGT
CTGTCGGCGC TGGCCGGGAT CGGCCTGGTA GGGCTGCTGG TCGACCGGCA CCTGCGCAAG
CTGGTATTGC TGAGCCTGGC CGGTTTTGCC TTGGCCACGC TGGCATTGGG GCAGGCATCG
TCGTGGCTTG TGTACCTGAG CATCGCCTTG TGGGGAATGA CCTATGGCGG CGCCCCGACC
CTGCTGCAGA CAGCGTGCGC CGACGCCGCA GGCCAGGGTG GTGATGTGGC GCAGTCGATG
CTGGTGACGG TGTGGAACTG CGCCATTGCC CTGGGCGGAA TCATTGGCGG ATTGCTGCTG
ACAGGGGCCG GCGTGGCGTG GTTTGGCGGG GTGGTGCTGG GGTTGATCGC CTTGGCCTGG
CTGCTGGCCG TGGCCGGGCG GGGAAGCGGT TTTGTGGCGG GGAGGCGCTA A
|
|---|
| Protein sequence | MSQTSSAPVL AASNERLPVG GLLALAMTGF IAILSETLPA GLLDQIADGM HISQAMAGQW
VTAYALGSLL TAIPLVTLTQ GWYRRRALLL AIIGFVLFNG LTALSDSNSL TLVLRFFTGA
AAGLAWGLIA GHARRMVPVP LQGRAMALAM LGQPIALSLG LPIATWLGAG LGWRATFVVV
TLVASLLVVW VLRSVPDYPG QAAGKRPAAM QVLRTPGVLI VLLVILTWIL GHNILYTYIV
PLLAAAGMAA DIGPVLMVFG LSALAGIGLV GLLVDRHLRK LVLLSLAGFA LATLALGQAS
SWLVYLSIAL WGMTYGGAPT LLQTACADAA GQGGDVAQSM LVTVWNCAIA LGGIIGGLLL
TGAGVAWFGG VVLGLIALAW LLAVAGRGSG FVAGRR
|
|---|
| |