| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3300 |
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| Symbol | |
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| ID | 5193011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3708986 |
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| End bp | 3713476 |
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| Gene Length | 4491 bp |
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| Protein Length | 1496 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640587747 |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | YP_001268610 |
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| Protein GI | 148548508 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.377035 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACCA CTTTGCCGTC AGATGCGCAG GCCGCCATCG ACGCGTTCCA GGACGGCATC
ATCGGCAGGC GCCTGCCACC CTGGTTGCGT CATGCACCCG CTGAGCAACT GCCTGAGATC
GGCAGGGCAT TGTCAAACAG CCTTCGCTGC TGTGAGCAAG TGAACACGGT GCTGCGAGGC
ATCGAAGGCC TCGACAGTTT CGTCGCATCA GCCCTGGGAA AGGCCCTCGA CGAGCGTTAC
GGGCTTGGCC GTAACCCGCA CTTGCTCAGG TTCCTGGAGG GCCGCCGGGA AGCTGTGATC
AACAGTCAGC CGGTTGGCGC GCACCTGACT ACCGTGGTCT ATGAAGAAAA GCCGCTGCTC
GAAGTGGCAT TGCGCAACTT CACGGACGCG CAGGCGCAGG AAGGTGGCCA GCCGCGCGGT
AACCGCCTGC TGCTTCCACG CCACGGCACG GTCAAACCCC CTACGAGCAT CGAGTTTGCC
GGACTGTGTC GTGAGCTGGA CCTGGGTGAG CGCTATCAAC GTCATCTGGA TGCCATCCTC
ACGCCCTCTG GCAGTGCCGA GCGCCTGGTA TCGCAGCTTG TAGATGCCAC GCGCTACACC
ATGCTTGTGG ACGCTTACAA AGCCAGGCAA GAGGGAACGC TGGATGCCAG CGAACTCAAT
GTGATGGTGG CTGTGTGCGA GAAGGGTGAG CTGCCGCGCT TGGCGGGCGA CCTTGTGCAG
GCCAGGCAAC TGAAATTGCT GGGTTGCCAG ATTGAGCAGG TGACCGTGTT CGTAGTGGTT
GAGCAGGGCG TTTTGTTCAA CACGACGCGT CGGGTGTTGC TTTACGTGCC TGGAGACCCT
TTTTCGCCCT GGCGCGCGTT CGAGAGCCTC GACAAACTGA ACCGCGAACT GGGCCGTCGC
TTGCGAGACA AGGCTTACCA GCGTTTTTTC AGCCGCTTCG TGCTGCGGCG CGACAGCCAG
GCTTTTTTCG CCCAGGTCGC GGAGCGCTTC GATGGCCTGC CGGGCTGGGC TTTTCGCGAT
CTCGAACCGC GCTTGCAGGC TTACCCGCAG CCGTTGTTCA TCAGCCTGGC ACAGGCACGT
ATCCACCAGA TCAAGGACGA TGCGGCGATG ATCGCGGTGC CTGTGGCCAG GCTGGATCGT
GAGGTTCAGC GCCAGCATGA CCTGCGCCTT GCAGCCGAAG GATGGGCGCT GCTCAACCTG
GCCAGTTTCT TTGTGCCTGG GCTTGGCCTG GCGCTGCTGG CCGTGACGGC CTACGAACTA
CTGGGTGAGG TCTACCATGG CGCCGAGGCC TGGCAGCAAG GCGATCGTCA GGAGGCGCTC
GACCATTTGA CCCACGTGGC GACAGACCTT GCCGTGCTGG CGACCACGGT AGCCGGGGTG
GGTGTCGCTC GACGGGTTTG GGCACGCTCT GCGAAGGTCG ATGCCATGGT GCCGGCCCGG
CTGGAGGACG GCACTGAGAA ACTTTGGCAA CACGACTTGA CCCTGTTTCA AAGCCAGGCC
CCCGTTGCGG CCTCGAGCCG GGATGCCTTG GGTATTCGGC GTCAGGACGG GCGGGCCTGG
ATCGAAATGG ACGGGCATCA CTATCGCGTG GCAGAGGCGG GTGATGATCA ATGGCAGTTG
TATCCGGTCG ACGGCCACGG GCCGTTGCTG CGCCACAATG GCGCAGGTGC CTGGCGTTTG
TGGAGCGAGC AACCGGCTCG GTGGACCGAC AAATACCGCA TGTTCCGGCG TTTGGGCGAA
CCCTTCAATA GGCTGAATGA CGAACAGATC GATGAGGTTC TGCTGTTCCA TGGCCTTGAT
GGCGACGACC TGCGTGGCCT GCATGTACAC GCCCAGGCAC CGAGCCCCGG GATGATCGAC
AGTGTGGAGC GGGTCAGGCT TGATCAACGC ATCCGCAGCA TGATTGGCCG TCTGCGCAGC
GGCGAGCCGG TAGCAGATAC AACAGTGCTC GATCACGCTC GGCGCCTGCC AGGCGCGAGT
GGCCTGACAG ATCAGGCACT GGCCGCGTTG GCATGGACAC AGCGCCGAAC ACTGCTGCAG
CACCTTTTCG AAGCCTTGCA GCCCAGCGAC ACCGCTGGCA GCGCGGCGTT GCGCCGGGTG
TTCCCGAGGC TGAGCGCGCG CACTGCGCAA GCACTGGTAC AGGCCGCCAG CAGCATTGAT
CGCACGCGGC TGCTGTCCAG CGGCAGGGTT GTACTGGGGC TCGCCGAAGC GGCAAGGGGC
AGTGTGCTGG CTACCCGCCA GGCTCGGGTA TTTGAAGCGT TGTACCTTGA TACCCCGCAG
CATGCAGACC TGGCACGGGT GGCCTTGGGC TTGTTGCGGT ATCTACCCGG AGGTGAAGGT
GTGTGCTGGC GCCTGTACGA AGGTTGCCTG GGCGGGCCGA TGCTGGCGAA GACCGAGCAA
GGGCAGCGGG CGTTCGATCT GGTGCACGTG AACGGTACGT TTCAACTGCA TGGCAGCCAG
GGCACGGCGC TGGGTGAGGC AGGTGAGTTG TTTGACGTCA TGGCGCCAGC CTATACCGAA
GCGCAGAGGG CGGCGATGGG GATCGGCGAT CCATTTACGC ACAACCTCAG GGTGATACTG
GCGCGCGAAG CGGCACGCCA TCGTGATGAG ATCAGTCGTT TGCTTGGCGC GGTACGCCCA
GGTGCTGTCC GAGGGCCCAT GCGCTTGGCC GATGGACGTA TTGGCTACCC ACTGGGTGGT
GGCGGAGTAG GTGGGTTCGC ATCAAGGGGG AGTGCCCTGA GGGCAACGCT GCGCGATCTC
TTTCCGTGGT TGAGTGATGA GCAGGTCGAG ACCTTCGCCG ATGACGCCAG GCGTTCAGGG
CAGCAGATTG AACACGTACT GACTGACCTT CGCAATGAGT TCGCCATCCT GCGCATCACA
CTGAATACCT GGGTGGCACG AGGGCAGGGC GATGTCAGGG AAGATCGAGA GGCTTTACGC
CAGACGTTGT TCAATTGTTG GCGGCGGTCG GTGGGCGTGG GGGAACTGCA GATCAATGCA
CAGGAAAACC TCCACGTCAT GTTCTGCAAT TTCAGATCGA GCGGCTTGCC CAACATACCC
CCACAGGTCA GCTTCAGAGG TGTGACCAGC CTGTCGCTGC TGCACCTTGA CCTTCTGGAG
GTGCCCAGCA GCCTATTGCT GGCTTTCCCT AACCTGCAAA CCCTCGATCT GGGAGGGAAC
CTGTTGACGC GCCTTCCGCA GCCGTTGCTG CAGATACCGC AGTTGCGGCA TCTGAGCCTG
ACCAACAACC GGATCGTCCT GAACACTGCA CAAACCGCCA CATTGGCCAG TTGCACGAGC
CTGCAGTCTC TCGACCTGTC CCACAACCCC CTGGGGAGCC GGTTCACGTT GGCGGGTTTG
GCTGAGTTGC GTTGGCTGAA CTTGCGCGAC ACACAGATCT CGCAGTTTCC ACTGGGCGTG
TTCGACAACG CTCAGTTGGT ATCCGTTGAC TTGCGGGATA ACCGGATCAG GCACATTCCA
GAGGGTTTCT ACCAGTTGCC CGTGTGGCAT CGGCGGCGGT TTCGCTTGAA TGCGAACCCC
TTGGGCGAGG CCCAGACGTT ACGCTTGCAG GCTTCGTTGA GCAGCGTCGA TCCGGCCCTC
GACGAGGAGC AAGTGCTTCT GCGCCTGCAG CACGCGCGTG AAGTCTGGGG GGATGCCGTG
GCCCCGGAGC ATCGCGGCTT GATGCTTGCA GCCTGGGACT CGCTGGATGC AGGGCAGGAC
GCCGAGCGTT TTTTTCGTGT GCTTCGCCAG TTGTTGCTGT CCGAAGACTT TCGTGTCAAT
GCGCGTGCAC TGGGCAATCG GGTAATGGCG GTATTGCAAG CGATGGCCAT TACGCCAGAG
CTGCGGCAGA ACTTGCTGTC AGTGGCCAAT GATGAGTGGG GGTGCCAGGA CGGTGCAACC
TGGTGCTTGA GCAACCTTGA ACTGAATTTG TTGGTTTGGC AGGTTGAGCA CGCGGCTCAG
GGAGAAAGCG AACGCGCTTT GCTAGACCTG GGCAGACGTT TATGGCGCCA GGATGCAGTC
GACATGTTCG CTACCCGATG GGCGCTACAG CATGGCAGGA CGCTGGAAGG AAGCGAGGTG
GGGTTGGCTT TCAGGATCGG GCTGAGGGAG CGTCTCGACC TGCCATTGCA GGTGGGAGAA
ATGAGCTTTC TTGCGATCTC AGGCGTCCTG GAGGCGGACC TTGCAGAGGC AGAGGCTGCG
GTGCGGGATG CAGAAACACC GGAAGAGATT GCCCGCTCCA TGGTTGACCG TGAATTTTGG
CAGGCGCACC TGGAGCGTTC CCATCCTGAG CGATTCGCTG CGGTCGACCT GCCGTTCAGA
AGGCAGCTTG AAACCGTGCT TGACGACGAA GCGCTGAGCG AAGGGGCCAG GATCGACCAG
GCGGATGCCA TTCGTGATGC TCAGCGCGCT GCACGCAGAG GGCTGATGCT GGATATGACG
ATTCAAGCGA TGGAAATGGG ACCCAAGGGG CCCTCGATCG ATGTACGTTG A
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| Protein sequence | MDTTLPSDAQ AAIDAFQDGI IGRRLPPWLR HAPAEQLPEI GRALSNSLRC CEQVNTVLRG
IEGLDSFVAS ALGKALDERY GLGRNPHLLR FLEGRREAVI NSQPVGAHLT TVVYEEKPLL
EVALRNFTDA QAQEGGQPRG NRLLLPRHGT VKPPTSIEFA GLCRELDLGE RYQRHLDAIL
TPSGSAERLV SQLVDATRYT MLVDAYKARQ EGTLDASELN VMVAVCEKGE LPRLAGDLVQ
ARQLKLLGCQ IEQVTVFVVV EQGVLFNTTR RVLLYVPGDP FSPWRAFESL DKLNRELGRR
LRDKAYQRFF SRFVLRRDSQ AFFAQVAERF DGLPGWAFRD LEPRLQAYPQ PLFISLAQAR
IHQIKDDAAM IAVPVARLDR EVQRQHDLRL AAEGWALLNL ASFFVPGLGL ALLAVTAYEL
LGEVYHGAEA WQQGDRQEAL DHLTHVATDL AVLATTVAGV GVARRVWARS AKVDAMVPAR
LEDGTEKLWQ HDLTLFQSQA PVAASSRDAL GIRRQDGRAW IEMDGHHYRV AEAGDDQWQL
YPVDGHGPLL RHNGAGAWRL WSEQPARWTD KYRMFRRLGE PFNRLNDEQI DEVLLFHGLD
GDDLRGLHVH AQAPSPGMID SVERVRLDQR IRSMIGRLRS GEPVADTTVL DHARRLPGAS
GLTDQALAAL AWTQRRTLLQ HLFEALQPSD TAGSAALRRV FPRLSARTAQ ALVQAASSID
RTRLLSSGRV VLGLAEAARG SVLATRQARV FEALYLDTPQ HADLARVALG LLRYLPGGEG
VCWRLYEGCL GGPMLAKTEQ GQRAFDLVHV NGTFQLHGSQ GTALGEAGEL FDVMAPAYTE
AQRAAMGIGD PFTHNLRVIL AREAARHRDE ISRLLGAVRP GAVRGPMRLA DGRIGYPLGG
GGVGGFASRG SALRATLRDL FPWLSDEQVE TFADDARRSG QQIEHVLTDL RNEFAILRIT
LNTWVARGQG DVREDREALR QTLFNCWRRS VGVGELQINA QENLHVMFCN FRSSGLPNIP
PQVSFRGVTS LSLLHLDLLE VPSSLLLAFP NLQTLDLGGN LLTRLPQPLL QIPQLRHLSL
TNNRIVLNTA QTATLASCTS LQSLDLSHNP LGSRFTLAGL AELRWLNLRD TQISQFPLGV
FDNAQLVSVD LRDNRIRHIP EGFYQLPVWH RRRFRLNANP LGEAQTLRLQ ASLSSVDPAL
DEEQVLLRLQ HAREVWGDAV APEHRGLMLA AWDSLDAGQD AERFFRVLRQ LLLSEDFRVN
ARALGNRVMA VLQAMAITPE LRQNLLSVAN DEWGCQDGAT WCLSNLELNL LVWQVEHAAQ
GESERALLDL GRRLWRQDAV DMFATRWALQ HGRTLEGSEV GLAFRIGLRE RLDLPLQVGE
MSFLAISGVL EADLAEAEAA VRDAETPEEI ARSMVDREFW QAHLERSHPE RFAAVDLPFR
RQLETVLDDE ALSEGARIDQ ADAIRDAQRA ARRGLMLDMT IQAMEMGPKG PSIDVR
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