| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3286 |
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| Symbol | |
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| ID | 5194108 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3697444 |
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| End bp | 3698658 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640587733 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001268596 |
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| Protein GI | 148548494 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR00999] Membrane Fusion Protein cluster 2 (function with RND porters)
[TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.522349 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAACC CACGCAAGCT AGCCCTTCTG GCTGCCGCCA TTGCTGCGCT TGGCCTCGCG
GGCCTGGCCT GGACCGGCAA CCTCGGCCAG GCGTCCAAGG CTCAAGCCCC CCATGACGAC
CATGGTGAAG ACAGCCACGG CCATGCTACA GCGCAGGCCG CCGAAGGCCC TGCAGAGAAG
GAGCACGGCG AAGAAGAAGG CCAGCTGCAC CTGTCTATCG CGCAGATCGA ATCGGCTGGC
ATACAACTGG CTGCCGCAGG CCCCCGTGAG CTGGGCACCG CCATCAGCTT CCCGGGTGAG
ATCCGCTTTG ACGAGGACCG CACCGCACAT GTGGTACCCC GCGTGCCGGG TGTGGTCGAA
GCGGTGCAAG CCGAGCTGGG CCAGGCGGTC AAGCGCGGCC AGGTACTGGC GGTGATTGCC
AGCCAGCAGA TCTCCGACCT GCGCAGTGAG CAGCAGGCCG CTCAACGTCG CCTGGAACTG
GCGCGGTTGA CCTTTCAACG GGAACAACAG CTGTGGCAGG AGCGAATCAG CGCCGAGCAG
GATTACCTGC AGGCACGTCA GGCGTTGCAG GAGGCCGAGA TCGCCCTGGC CAATGCTCGG
CAGAAGGTCG CAGCGGTGGG GCCGGCCGGT GCCGGCAACC GCTATGAACT GCGCGCCCCC
TTCGATGCGG TCGTCGTGGA GAAGCACCTG ACCGTGGGCG AGGTGGTCGA CGAGACCAGC
AACGCGTTCA CCCTGTCCGA CCTGAGCCGG GTGTGGGCCA CCTTCGCCGT GGCCCCTCGT
GACCTGGGCA AGGTGGTGAC CGGCCGTGAA GTCACGGTCA GTGCGCCGGA CCTGGGCGCC
CAGGTTCTGG GCAAGGTCAA CTACGTCGGC AGCCTGCTCG GCGAGCAGAA CCGTGCCGCC
ACTGTGCGTG CCACTCTGGC CAACCCCAAT GGCGCCTGGC GCCCCGGGCT GTTCGTCAAT
GTGGCTGTCA GCGTCGACCG CTTCGATGCC GCCGTGGCGG TGCCGGAAAG CGCCCTGCAA
ACCTGGGAGG CGCAGACCGT GGTGTTCGCC CGCACGGAGG AAGGCTTCGA GGCGCGCCCG
GTGAAGACTG GCCGTCGCGA TGCTGGCCAG GTGGAAATCA CCAGCGGCCT GGCCGCCGGT
ACTCAGGTTG CGGCCGCCGG CAGCTTTGTC CTCAAGTCGG AACTGGGCAA GGGCTCGGCC
GAGCACAGCC ACTGA
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| Protein sequence | MTNPRKLALL AAAIAALGLA GLAWTGNLGQ ASKAQAPHDD HGEDSHGHAT AQAAEGPAEK
EHGEEEGQLH LSIAQIESAG IQLAAAGPRE LGTAISFPGE IRFDEDRTAH VVPRVPGVVE
AVQAELGQAV KRGQVLAVIA SQQISDLRSE QQAAQRRLEL ARLTFQREQQ LWQERISAEQ
DYLQARQALQ EAEIALANAR QKVAAVGPAG AGNRYELRAP FDAVVVEKHL TVGEVVDETS
NAFTLSDLSR VWATFAVAPR DLGKVVTGRE VTVSAPDLGA QVLGKVNYVG SLLGEQNRAA
TVRATLANPN GAWRPGLFVN VAVSVDRFDA AVAVPESALQ TWEAQTVVFA RTEEGFEARP
VKTGRRDAGQ VEITSGLAAG TQVAAAGSFV LKSELGKGSA EHSH
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