| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3285 |
|---|
| Symbol | |
|---|
| ID | 5194107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3694281 |
|---|
| End bp | 3697427 |
|---|
| Gene Length | 3147 bp |
|---|
| Protein Length | 1048 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640587732 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_001268595 |
|---|
| Protein GI | 148548493 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.571532 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAAC GCCTCATTCA ATTTGCCATC GAGCAGCGCC TGGTGGTGAT GCTGGCCGTG
GTCCTGATGG CCGCGGTGGG TATCCACAGC TACCAGAAAC TGCCGATCGA TGCTGTGCCG
GACATCACTA ACGTCCAGGT GCAGATCAAC ACCGCCGCCC CCGGCTATTC GCCGCTGGAG
ACCGAGCAGC GCATCACCTT TGCCATCGAG ACCGCGATGG CTGGCCTGCC AGGGCTCAAG
CAGACCCGCT CGCTGTCGCG CTCGGGCCTG TCGCAAGTCA CGGTCATTTT CGATGATGGC
ACCGATATCT TCTTCGCCCG CCAACTGGTC AACGAGCGCC TGCAGGTGGC CCGCGAGCAA
TTGCCTGAGG GCATCGAGGC GGGCATGGGG CCGATCTCCA CCGGGCTGGG GGAAATTTTC
CTGTGGACGG TGGAAGCCCA GGAGGGGGCG CTCAAGGAAG ACGGTACACC TTACACCCCA
ACTGACCTGC GGGTGATTCA GGACTGGATC ATCAAGCCGC AACTGCGCAA TGTACCGGGT
GTGGCCGAGG TCAACAGCAT TGGCGGCCAT GCCAAGCAAT ACCTGATTGC ACCAGAGCCC
AAGCGCCTGG CGGCCTACAA GCTCACCCTC AACGACCTGA TTGCAGCGCT GGAGCGCAAT
AACGCCAACA TTGGCGCTGG CTATATCGAG CGCAATGGCG AGCAGTTGCT GATTCGCGCG
CCGGGCCAGG TGGCCTCGGC CGAAGACATT GCCAACATCG TTATCTCCAG CGTCGACGGC
ACGCCGATCC GCGTCAGCCA TGTCGCCCAG GTTGGCCTTG GCGAAGAGCT GCGCTCGGGG
GCAGCCACCG AAAACGGTCG GGAAGTGGTG CTGGGCACGG TGTTCATGCT GATTGGCGAG
AACAGCCGCA CGGTGTCGCA GGCGGTCGCT GCAAAATTGG TCGAGATCAA TCGCAACCTG
CCCAAGGGCG TAGTCGCCGT GACGGTGTAC GACCGCACCA ACCTGGTGGA GAAAGCCATC
GCCACGGTGA AGAAGAACCT GATCGAAGGT GCGATCCTGG TGATTGCCGT GCTGTTCCTG
TTCCTCGGCA ACATTCGCGC TGCGCTGATC ACGGCCATGG TTATCCCGCT TTCGATGCTG
TTCACCTTTA CCGGCATGTT CAGCAACAAG GTCAGTGCCA ACCTGATGAG CCTGGGCGCG
CTGGACTTCG GCATCATCGT CGACGGCGCG GTGGTGATCG TGGAAAACGC CATCCGTCGC
CTGGCCCATG CCCAGCAGCG CCACGGTCGC ATGCTGACCC GCAGCGAACG GTTCCATGAG
GTGTTTGCCG CTGCCCGCGA AGCACGCCGG CCGCTGATCT ATGGGCAGTT GATCATCATG
GTGGTGTACC TGCCAATCTT TGCCCTGACC GGGGTCGAGG GCAAGATGTT CCACCCTATG
GCCTTTACCG TGGTCATGGC CCTGTTGGGC GCGATGATCC TTTCGGTCAC GTTCGTTCCG
GCAGCCATTG CCCTGTTCGT CACCGGCAAG GTCAAGGAAG AGGAAGGCCT GGTGATGCGT
ACGGCACGGC AGCGCTATGC CCCGGTGCTG GCCTGGGTGC TGGGCCGGCG CAAACTGGCA
TGTGCCGCCG CCGCCGCCCT GGTGCTGTTG TCGGGCGTGA TGGCCAGCCG CATGGGCAGC
GAGTTCATTC CCAGCCTCAG CGAGGGTGAC TTCGCCCTGC AGGCCCTGCG CGTGCCGGGC
ACCAGCCTGT CGCAGTCGGT GGACATGCAA CAGCGTCTGG AGCAGGCGAT CATCGCCCAG
GTGCCGGAGG TGGAGCGGGT GTTTGCCCGC ACCGGCACTG CCGAGATTGC CTCCGACCCG
ATGCCGCCGA ACATTTCCGA TGCCTACGTG ATGCTGCGCC CGCGCGAACA ATGGGTTGAC
CCGGGCAAAC CGCGAGATGA ACTGATCGCC CAGGTGCAAC GCGCCGCTGC CAGTGTGCCG
GGCAGCAACT ACGAGCTGTC GCAGCCGATT CAGCTGCGGT TCAACGAGCT GATTTCCGGG
GTGCGCAGTG ATGTGGCGGT GAAGCTGTTC GGTGACGACA TGGAGGTGCT CAACCGCACT
GCCGCACAGA TCGCTGCCAG CCTGCAAGGG GTGTCGGGCG CGTCCGAGGT GAAGGTGGAG
CAGACGACGG GCCTGCCGGT ACTGACCATC GACATCGACC GTGACAAGGC CGCACGTCAT
GGCCTGAATG TGGGCGATGT GCAGGATGCC ATCGCCATTG CCGTGGGCGG CCGCACCGCC
GGTACGCTGT ATGAAGGCGA CCGCCGCTTC GACATGGTCG TGCGCCTGTC GGAGACCTTG
CGGACCGATG TCGACGGGCT GGCCAGCCTG CTGATTCCGG TTCCGGCCAG TGCCGCTGAG
GGGGCCGGGC AAATCGGTTT CATCCCGCTG TCGCAGGTCG CCACGCTGAA CCTGCAACTG
GGCCCGAATC AGGTGAGCCG CGAGGATGGC AAGCGCGTGG TGGTGGTCAG TGCCAACGTG
CGTGGACGCG ACCTGGGCTC GTTTGTGCAA GAGGCTGAGC AGGCCCTGAT CGACCAGGTG
CAGGTACCAC CGGGTTACTG GACGCGTTGG GGAGGGCAGT TCGAACAGTT GCAGTCGGCA
GCCGAGCGCT TGCAGGTGGT GGTGCCGGTG GCCCTGCTGC TGGTCATGGC GCTGTTGCTG
ATGATGTTCA ACAACCTCAG GGATGGCCTG CTGGTGTTCA CCGGCATCCC CTTTGCCCTG
ACCGGCGGGG TGCTGGCGCT GTGGGTGCGT GATATTCCGC TGTCTATTTC TGCCGGCGTC
GGGTTCATTG CATTGTCGGG AGTGGCAGTG TTGAACGGGC TGGTGATGAT TGCCTTTATC
CGCGGGCTGC GCGAGGAAGG GCGCACGCTG CGGGCGGCGG TCGAGGAGGG GGCGCTGACC
CGCTTGCGGC CAGTACTGAT GACGGCGCTG GTGGCCTCGC TGGGGTTCAT ACCGATGGCC
TTGGCCACCG GGACCGGGGC AGAGGTGCAG CGGCCACTGG CGACGGTGGT GATTGGTGGG
ATCTTGTCTT CTACCGCGCT GACGTTGCTG GTGTTGCCGG CGTTGTATCA GTGGGCGTAT
CGGCGGGATG AGCAGCAGGA AGGCTGA
|
|---|
| Protein sequence | MFERLIQFAI EQRLVVMLAV VLMAAVGIHS YQKLPIDAVP DITNVQVQIN TAAPGYSPLE
TEQRITFAIE TAMAGLPGLK QTRSLSRSGL SQVTVIFDDG TDIFFARQLV NERLQVAREQ
LPEGIEAGMG PISTGLGEIF LWTVEAQEGA LKEDGTPYTP TDLRVIQDWI IKPQLRNVPG
VAEVNSIGGH AKQYLIAPEP KRLAAYKLTL NDLIAALERN NANIGAGYIE RNGEQLLIRA
PGQVASAEDI ANIVISSVDG TPIRVSHVAQ VGLGEELRSG AATENGREVV LGTVFMLIGE
NSRTVSQAVA AKLVEINRNL PKGVVAVTVY DRTNLVEKAI ATVKKNLIEG AILVIAVLFL
FLGNIRAALI TAMVIPLSML FTFTGMFSNK VSANLMSLGA LDFGIIVDGA VVIVENAIRR
LAHAQQRHGR MLTRSERFHE VFAAAREARR PLIYGQLIIM VVYLPIFALT GVEGKMFHPM
AFTVVMALLG AMILSVTFVP AAIALFVTGK VKEEEGLVMR TARQRYAPVL AWVLGRRKLA
CAAAAALVLL SGVMASRMGS EFIPSLSEGD FALQALRVPG TSLSQSVDMQ QRLEQAIIAQ
VPEVERVFAR TGTAEIASDP MPPNISDAYV MLRPREQWVD PGKPRDELIA QVQRAAASVP
GSNYELSQPI QLRFNELISG VRSDVAVKLF GDDMEVLNRT AAQIAASLQG VSGASEVKVE
QTTGLPVLTI DIDRDKAARH GLNVGDVQDA IAIAVGGRTA GTLYEGDRRF DMVVRLSETL
RTDVDGLASL LIPVPASAAE GAGQIGFIPL SQVATLNLQL GPNQVSREDG KRVVVVSANV
RGRDLGSFVQ EAEQALIDQV QVPPGYWTRW GGQFEQLQSA AERLQVVVPV ALLLVMALLL
MMFNNLRDGL LVFTGIPFAL TGGVLALWVR DIPLSISAGV GFIALSGVAV LNGLVMIAFI
RGLREEGRTL RAAVEEGALT RLRPVLMTAL VASLGFIPMA LATGTGAEVQ RPLATVVIGG
ILSSTALTLL VLPALYQWAY RRDEQQEG
|
|---|
| |