| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3245 |
|---|
| Symbol | |
|---|
| ID | 5194187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3655215 |
|---|
| End bp | 3656498 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640587692 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001268555 |
|---|
| Protein GI | 148548453 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.363775 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAACA CCCCCTACCC CCAGTCCTAC TACGCCGCCT CGGCCAACCC GGTGCCGCCA
CGTCCGGCGC TGCAGGGTGA GGTGGAAACC GATGTGTGCA TCATCGGTGC CGGCTACACC
GGCCTGTCCA GCGCCCTGTT CCTTCTGGAG AACGGCTTCA AGGTGAGCGT CGTCGAAGCG
GCCAAGGTCG GCTTCGGTGC ATCGGGCCGC AACGGCGGCC AGATCGTCAA CAGCTACAGC
CGCGACATTG ATGTCATCGA ACGCACCGTC GGCCCCAAGC AGGCACAACT GCTGGGCCAC
ATGGCCTTCG AGGGCGGGCG CATCATTCGT GAACGCGTGG CCAAGTACAA CATTCAGTGC
GACCTGAAAG ATGGTGGCGT ATTCGCTGCC CTTACCAGCA AGCAGATGGG CCACCTGGAA
TCGCAAAAGC GCCTGTGGGA ACGCTTTGGC CATAATCAGC TGGAGCTGAT GGACCAGAAG
CGCATCCGCG AAGTGGTTGC CTGCGACAGC TACATCGGCG GCATGCTCGA CATGAGCGGC
GGCCACATCC ACCCGCTGAA CCTGGCCCTG GGTGAAGCTG CCGCGGTCGA GTCGCTGGGT
GGCATCATCT ATGAGCAAAC CCCGGCCGTG CGCATCGAAC GCGGTGCCAA CCCGGTCGTG
CATACCCCGC AGGGCAAGGT CCGCGCCAAG TTCATCATCG TTGCCGGCAA CGCCTACCTG
GGCAACCTGG TACCCGAGCT GGCCGCCAAG TCCATGCCAT GCGGCACGCA GGTGATCACC
ACCGAGCCAC TGGGCGAAGA ACTGGCACGC ACCCTGCTGC CGCAGGACTA CTGTGTCGAG
GATTGCAACT ACCTGCTCGA CTACTACCGC CTGACCAGCG ACAAGCGCCT GATTTTCGGT
GGCGGCGTGG TGTACGGCGC GCGTGACCCG GCCAACATCG AGGCGATCAT CCGCCCGAAA
ATGCTCAAGG CCTTCCCGCA GCTGAAGAAC GTGAAGATCG ACTACGCCTG GACCGGTAAC
TTCCTGCTGA CCTTGTCGCG CCTGCCACAG GTTGGCCGAA TTGGCGACAA CATCTACTAC
TCGCAGGGTT GCTCGGGCCA CGGCGTGACC TATACCCACC TGGCGGGCAA GGTGCTGGCC
GAGGCCCTGC GCGGCCAGGC AGAGCGTTTC GACGCCTTCG CCGGCCTGCC GCACTATCCG
TTCCCGGGTG GCCAGATGCT GCGTGTGCCG TTCAGCGCCA TCGGTGCCTG GTACTACAGC
CTGCGCGATC GCCTGGGCTT CTGA
|
|---|
| Protein sequence | MANTPYPQSY YAASANPVPP RPALQGEVET DVCIIGAGYT GLSSALFLLE NGFKVSVVEA
AKVGFGASGR NGGQIVNSYS RDIDVIERTV GPKQAQLLGH MAFEGGRIIR ERVAKYNIQC
DLKDGGVFAA LTSKQMGHLE SQKRLWERFG HNQLELMDQK RIREVVACDS YIGGMLDMSG
GHIHPLNLAL GEAAAVESLG GIIYEQTPAV RIERGANPVV HTPQGKVRAK FIIVAGNAYL
GNLVPELAAK SMPCGTQVIT TEPLGEELAR TLLPQDYCVE DCNYLLDYYR LTSDKRLIFG
GGVVYGARDP ANIEAIIRPK MLKAFPQLKN VKIDYAWTGN FLLTLSRLPQ VGRIGDNIYY
SQGCSGHGVT YTHLAGKVLA EALRGQAERF DAFAGLPHYP FPGGQMLRVP FSAIGAWYYS
LRDRLGF
|
|---|
| |