| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3238 |
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| Symbol | |
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| ID | 5194910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3648812 |
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| End bp | 3650686 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640587683 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001268548 |
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| Protein GI | 148548446 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACAGACG CCGTCGCCCT CGGAGTCGCT GCCGACTCCG CCGTTGCCAT GCTGTTAATC
CACCCGGTAG ATGATCGGGT ACTGCAAGCC AACAACGCCG CGCTTGATTT ACTGGGCTGC
GCCGCAAATG AGCTGCCCGG TCATGCCTTT AGCCATTTTC TGCGAGGGGG AATCGCACTG
TGGGTGAGCT TTACGGATGA GGTGCTGACT CAAGGCGAAG CGTGGTCGGA CGACCTGCTG
CTGGTGGATC TGCAACTGCG GCAAATAGCG GTGGAGGTTG CGGCTAGCGC GGTTGATGGC
GGAAAAATTG TACTGGCGGT GCAGCGCCGG GACCTTCTGG AGCAGCGCCG TAACCGTGCA
GAGGCGCGCC GCCAACACCG TTTGGGTCAC GTGGGATGGG AGCGGATCAG CCAGGTGTTC
GAGCGCATCC AGCAGCAAAA CCGGCTGATT CTTGGTGCAG TTGGCGAGGG CATCTATGGG
CTCGATACCC GGGGCCAGAC CACGTTCATC AACCCCGCCG CCGAGCGTAT TCTGGGGTGG
AGTGCCGTCG ACATGATTGG CCAGGATGCC CACCATTTGT TCCACCACAG CCATAGCGAC
GGACGTGCGT TCGAGGTCAA TCAGTGCCCC ATCCATGCTT CGTTCAGCGA TGGACAAGTT
CATCGCGTGG ACCACGAGGT GTTCTGGCAC AAGAGCGGCG AACCAATCGC CGTCGAGTAC
ACCAGCACTC CAATCTTCGA GATGGGAAGG CTGGTGGGGG CGGTGGTGTT GTTTCGGGAC
ATCCGCGAAC GACAGCGCAC TGAAGCGCGC CTGCGCGATG CGCTAAGTGA AGTAGAGCAG
TTGAAGACTC GGCTGGAGAT GGAAAACCAA TACTTGCAGG AGGAAATCAA CGCCCACGGC
AATCACCACG AGATCGTCGG CGAAAGCCCA GCGGTCAAGC ATCTGTTACA GCAGATTGAC
CTGGTCGCAG CTACCGACGC CAACGTGTTG GTCACCGGCG AGTCAGGCAC GGGTAAGGAG
CTTGTGGCTC GCGCGATTCA TGCCAGCAGC CCCCGGCGCG ACCGCCCTCT GATTCGGGTC
AATTGCGCCG CGGTGCCCCG TGAATTGTTC GAGAGCGAGT TCTTCGGCCA CCTCAAAGGG
GCCTTCACCG GAGCGGTCAG CAACCGAGTG GGTCGCTTTG AGTTGGCAGA CGGCGGAACC
TTGTTTCTCG ATGAGGTGGG AGAGATTCCG CTGGAGCTAC AAAGCAAGTT GCTCCGTGTT
CTACAGGACC GCCAGTTTGA GCCTGTAGGC GACAATCGCA CCAGGGCCGT TGATGTGCGA
GTTATCGCCG CAACGAACCG TGACCTGCGC GATATGGTCG CCCGAGGGGC GTTCCGGGAA
GATTTATACT TCCGCTTGAA TGTGTTCCCT ATACGCTCGG TGCCCTTGCG GGAGCGACTT
GAGGACATTC CGTTGCTCGC CAGCCATTTT CTTGAAAGGG CTAGCCTGGC GTTTAACAAG
CCGGGCATTC GCATGTCGCT GACCCAAGTC GCGGTGCTTC AGCAGTACGC CTGGCCAGGC
AACATCCGCG AGCTTCAAAA TGTGATTGAG CGACAGACCA TCGTCTCCCG AGACGGTCGC
GTGAGCTTTC ATGAGGTTCT GGCGCCAAAC GGCCCGTCCA GTGGCCCAGT ATCTTCAATT
GCACAATGCC AGCCTGAGCC GACTGCCGAC AAAGACTGGG AGCGGCAGAT GAAGCTGAAT
GCGATCTCTG TGCTCAAACG AACAGCAGGG AAAGTCTCCG GCGAGGGTGG TGCTGCGCAA
TTGCTGGGGT TGAAGCCCAC AACCTTGGCG TCTCGACTCA AGAAGTGGGG CGTTGATCCG
AGAGATTACA AATAG
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| Protein sequence | MTDAVALGVA ADSAVAMLLI HPVDDRVLQA NNAALDLLGC AANELPGHAF SHFLRGGIAL
WVSFTDEVLT QGEAWSDDLL LVDLQLRQIA VEVAASAVDG GKIVLAVQRR DLLEQRRNRA
EARRQHRLGH VGWERISQVF ERIQQQNRLI LGAVGEGIYG LDTRGQTTFI NPAAERILGW
SAVDMIGQDA HHLFHHSHSD GRAFEVNQCP IHASFSDGQV HRVDHEVFWH KSGEPIAVEY
TSTPIFEMGR LVGAVVLFRD IRERQRTEAR LRDALSEVEQ LKTRLEMENQ YLQEEINAHG
NHHEIVGESP AVKHLLQQID LVAATDANVL VTGESGTGKE LVARAIHASS PRRDRPLIRV
NCAAVPRELF ESEFFGHLKG AFTGAVSNRV GRFELADGGT LFLDEVGEIP LELQSKLLRV
LQDRQFEPVG DNRTRAVDVR VIAATNRDLR DMVARGAFRE DLYFRLNVFP IRSVPLRERL
EDIPLLASHF LERASLAFNK PGIRMSLTQV AVLQQYAWPG NIRELQNVIE RQTIVSRDGR
VSFHEVLAPN GPSSGPVSSI AQCQPEPTAD KDWERQMKLN AISVLKRTAG KVSGEGGAAQ
LLGLKPTTLA SRLKKWGVDP RDYK
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