| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3233 |
|---|
| Symbol | |
|---|
| ID | 5193508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3642680 |
|---|
| End bp | 3643702 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640587678 |
|---|
| Product | alanine racemase |
|---|
| Protein accession | YP_001268543 |
|---|
| Protein GI | 148548441 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.16314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.588082 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCA TCAAAGACGT CGCGGCACTG GCGGGTATTT CCTACACCAC CGTGTCCCAT
GTACTCAACA AGACCCGTCC GGTCAGCGAA CAGGTGCGGC TGAAGGTGGA AGCCGCCATT
GTCGAACTGG ATTACGTGCC CAGTGCGGTG GCGCGCTCGC TGAAGGCGCG CAGCACGGCC
ACCATCGGCC TGTTGGTGCC CAACAGCGTC AACCCGTACT TCGCCGAGCT GGCGCGGGGT
ATCGAAGACG CCTGCGAGCG CAACGGCTAT TGCGTGATCC TGTGCAACTC CGACGACAAC
CCGCAGAAGC AGCGCAGCTA CCTGCGCGTG CTGCTGGAAA AACGCATCGA CGGCCTGGTA
GTGGCCTCGG TGGGCCAGGA CGACGACCTG CTGCAAAGCC TGGCCGGTGT GCGCACGCCA
ATGGTCATCG TCGACCGTGA GCTGGAAGGC GTCGATGCCG ACCTGGTGCG CATTGACCAC
GAGCAGGGGG CGTACCTGGC CACCCAGCAC CTGCTGGAGC TGGGCCATCG CGACGTCGCC
TATATCGGCG GCCCCGCCGA AACCGGTGTT ACCCAGCTGC GCCTGAGCGG CTTCCGCCGT
GCCATGGCCG AAGCCGGTGC GCCTGTGCTG GGCAGCCGTG TACTGCACTG CGACTTCACC
AGCCCGGGTG GCCATGCAGC GGCGGCGCAG GTGCTGGAAG GCAAGCGGCC CTCGGCGATT
TTTGCCGGCA ACGACATGAT CGGCTTTGGT GTGCTGCGCG CTGCCGCCGA ACGCAATATC
AGCGTACCCG GCGAGCTGTC GGTGATCGGC TTCGACGACA TCGAACTGAG CCGCTACGTG
TACCCACCAC TGACCACCGT GGGCCAGTCG ATCCGCGAGC TGGGCGAGAG CGCTGCCTCG
TTGCTGCTGA CGCGTATCGC TACGCCCCGG CAAGGCGCGG CGGAGCAGCG TATCGTCGCC
CCGCGTATCG TCTTGCGTGA ATCCACCGGG CCGCGCCCGG ACCTGTTCAA TGAATACCGC
TAA
|
|---|
| Protein sequence | MATIKDVAAL AGISYTTVSH VLNKTRPVSE QVRLKVEAAI VELDYVPSAV ARSLKARSTA
TIGLLVPNSV NPYFAELARG IEDACERNGY CVILCNSDDN PQKQRSYLRV LLEKRIDGLV
VASVGQDDDL LQSLAGVRTP MVIVDRELEG VDADLVRIDH EQGAYLATQH LLELGHRDVA
YIGGPAETGV TQLRLSGFRR AMAEAGAPVL GSRVLHCDFT SPGGHAAAAQ VLEGKRPSAI
FAGNDMIGFG VLRAAAERNI SVPGELSVIG FDDIELSRYV YPPLTTVGQS IRELGESAAS
LLLTRIATPR QGAAEQRIVA PRIVLRESTG PRPDLFNEYR
|
|---|
| |