| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3225 |
|---|
| Symbol | thrS |
|---|
| ID | 5190286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3636374 |
|---|
| End bp | 3638296 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640587670 |
|---|
| Product | threonyl-tRNA synthetase |
|---|
| Protein accession | YP_001268535 |
|---|
| Protein GI | 148548433 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0441] Threonyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.529889 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTTA TTACTCTTCC CGATGGCAGT CAACGTTCGT TCGATCACGC CGTATCCATA
GCCGAAGTAG CCGCTTCCAT CGGCGCTGGC CTGGCCAAGG CCACTGTGGC CGGCAAGGTC
GACGGCAAGC TGGTCGATGC GTGTGACCTG ATCAGCAACG ACGCCACCCT GCAGATCATC
ACCCCTAAAG ATGAAGAGGG ACTGGAGATC ATCCGTCACT CGTGCGCCCA CCTGGTTGGC
CACGCCGTGA AGCAGCTGTA CCCGACCGCC AAGATGGTGA TCGGCCCGGT CATTGACGAA
GGCTTCTATT ACGACATCGC CTACGAGCGC CCCTTCACCC CAGAAGACAT GGCCGCCATC
GAAAAGCGCA TGATGGAGCT GATCGAAAAA GACTACGACG TGGTCAAGAA AATGACCCCG
CGCGCCGAAG TCATCGATGT GTTCACGGCC CGTGGCGAAG ACTACAAGCT GCGTCTGGTC
GAAGACATGC CGGATGAACA GGCCATGGGC CTGTACTACC ACGAAGAATA CGTCGACATG
TGCCGTGGCC CGCACGTGCC GAACACCCGC TTCCTCAAGG CATTCAAGCT GACCAAGCTG
TCCGGCGCCT ACTGGCGTGG CGATGCCAAG AACGAGCAGC TGCAGCGCGT GTACGGCACG
GCCTGGGCTG ACAAGAAGCA GCTGGCTGCG TACATCCAGC GCATCGAAGA AGCCGAAAAA
CGCGACCACC GCAAGATCGG CAAGCAGCTC GACCTGTTCC ACCTGCAGGA AGAAGCCCCG
GGCATGGTGT TCTGGCACGC CAACGGCTGG ACCGTCTACC AGGTACTCGA GCAGTACATG
CGTGGCGTGC AGCGCGAAAA CGGCTACCAG GAAATCAAGA CCCCGCAGGT TGTCGACCGC
ATCCTGTGGG AGCGTTCCGG CCACTGGTCC AACTATGCCG AAAACATGTT CACCACTTCG
TCGGAAAGCC GTGACTACGC GGTAAAACCG ATGAACTGCC CGTGCCACGT GCAGGTGTTC
AACCAGGGCC TGAAAAGCTA CCGCGACCTG CCGCTGCGTC TGGCCGAGTT CGGTGCCTGC
CACCGTAACG AGCCGTCGGG CGCCCTGCAC GGCATCATGC GCGTGCGTGG CTTCGTACAG
GACGATGCGC ACATTTTCTG CACCGAAGAA CAGGTGAAGA AAGAAGCCGC CGACTTCATC
AAGCTGACCC TGGACGTGTA CAAGGACTTC GGTTTCAGCG ACATCGCCAT GAAACTGTCC
ACTCGTCCGG CCAAGCGTGT CGGTTCTGAA GAGTTGTGGG ACCGTGCTGA AACAGCGCTG
GCCGACGCCC TGAACGAATC CGGCCTTGAG TGGGAATACC AGCCGGGCGA GGGTGCCTTC
TACGGCCCGA AAATCGAGTT TACCCTGCGC GACTGCCTCG GCCGTAACTG GCAGTGCGGT
ACCCTGCAGT ACGACCCGAA CCTGCCAGAG CGTCTGGATG CCAGCTATAT CGCCGAAGAT
AACAGCCGAG TTCGCCCGGT CATGCTGCAC CGTGCCATCC TCGGTTCGTT CGAGCGCTTC
ATCGGCATGC TGATCGAGCA CTATGCTGGT GTGTTCCCGG CGTGGCTGGC CCCAACCCAG
GCGGTGATCA TGAATATCAC CGACAAGCAG ACCGATTTCG CCCTCGAGGT TGAGAAATCT
CTGAACGGAA GCGGTTTCCG TGCCAAGTCG GACTTGAGAA ATGAGAAGAT CGGCTTTAAA
ATCCGCGAGC ATACTTTGCT CAAGGTCCCG TACCTTTTGG TTATAGGGGA CCGCGAAGTC
GAAACGCAAA CCGTCGCTGT GCGTACTCGC GAAGGCGCAG ACCTGGGCTC CATGCCCGTC
GCCCAATTCG TTGAGCTGCT GACACAAGCG GTTTCCCGGC GTGGTCGCCA AGAATCGGAG
TAA
|
|---|
| Protein sequence | MPVITLPDGS QRSFDHAVSI AEVAASIGAG LAKATVAGKV DGKLVDACDL ISNDATLQII
TPKDEEGLEI IRHSCAHLVG HAVKQLYPTA KMVIGPVIDE GFYYDIAYER PFTPEDMAAI
EKRMMELIEK DYDVVKKMTP RAEVIDVFTA RGEDYKLRLV EDMPDEQAMG LYYHEEYVDM
CRGPHVPNTR FLKAFKLTKL SGAYWRGDAK NEQLQRVYGT AWADKKQLAA YIQRIEEAEK
RDHRKIGKQL DLFHLQEEAP GMVFWHANGW TVYQVLEQYM RGVQRENGYQ EIKTPQVVDR
ILWERSGHWS NYAENMFTTS SESRDYAVKP MNCPCHVQVF NQGLKSYRDL PLRLAEFGAC
HRNEPSGALH GIMRVRGFVQ DDAHIFCTEE QVKKEAADFI KLTLDVYKDF GFSDIAMKLS
TRPAKRVGSE ELWDRAETAL ADALNESGLE WEYQPGEGAF YGPKIEFTLR DCLGRNWQCG
TLQYDPNLPE RLDASYIAED NSRVRPVMLH RAILGSFERF IGMLIEHYAG VFPAWLAPTQ
AVIMNITDKQ TDFALEVEKS LNGSGFRAKS DLRNEKIGFK IREHTLLKVP YLLVIGDREV
ETQTVAVRTR EGADLGSMPV AQFVELLTQA VSRRGRQESE
|
|---|
| |