| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3172 |
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| Symbol | |
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| ID | 5190906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3588947 |
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| End bp | 3590371 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640587618 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_001268484 |
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| Protein GI | 148548382 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.30806 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGAAT TACATCCAGA CTCCTCAACC CCGCTGGTCA ACCAGATCAT CGATGGGCTG
CGCGAGCTGA TCGACAACCA AACCCTTAAG CCAGGCGCCA AGGTCCCGTC GATCCGCGCC
TTTGCCGCCA GCTATTCGGT GAGTACCTTC ACCGTGGTCG AGGCCTACGA CCGCCTGGTC
GCCCAGGGGC TGCTGGTGAG CCGTGGCAAT GCGGGGTTCT TCGTCAACCG TGCGGCGGGC
GAACTGCTGG AGCAGCACAA CACCGAGGCC GACACCAGTC GACCAACGTT CAACTCCGAG
TGGTACCTGC AGCAGATTTT CGAAATCCGC CAGTTGCCGT ACAAACCGGG GTGCGGCTGG
CTGCCCAACG ACTGGATGTA CGAAGACGGC CTGCGCCGCG GTCTGCGCCA GGTGGCCGGC
AGCCCGCTGG AGTTGTCGGG GTACGGCGAC CCCATGGGCC TGATGGAGCT GCGTGCGCTG
ACCGCCCAGA ACCTGCAACA AGAGCTGTCG ATCGTCGCCA ACCCAGCACA GCTGATGCTC
ACCCACGGCG CCAGCCAGGC CCTGGACCTG GCCGCACGCA CACTGGTGCG CCCGGGCGAT
GTGGTGCTGG TGGACGACCC CGGCTACCCG AACCTCATGA GCATCCTGCG CACCCAAGGC
GCAACCCTGG TAGGCGTGCC GCGCACCCCG GCCGGCTACG ACCTGAACCA GCTGGAGCAA
TTGCTCACCC ACCACCGCCC GACGGCGTTC TTCACCCAGC CGCACCTGCA CAGCCCGACG
TGCTCGCGCA CCCCGCTGCC GCAGTTGCAC CGCCTGCTGC AGCTTGCCAG CCAGCATGGC
TTCCGCCTGG TGGAGAACAA CCTGTACGCC GACATGGTCG CCGAGCCGCA GCCATGCCTG
GCCAGCCTCG ATCACCTGCA GCAGGTGGTG TACGTGGGCA GCTACTCGAA GAGCATCTCG
CCCAACGTGC GGGTCGGCTA CATGCTGGCC AATCCTGAGC TGATGCAGAA ACTGCTGCAC
CTGAAAATGC GTTCGGGCCT GACCACTTCG CAGGTGATGG AGCGCGTGGT GTACGCCGCG
ATCATCGACG GCCGCTGGCG TAAGCACCTC AAGCGCCTGC GCCAGCGGCT GGCCGAGGCG
CACCAGGAAG TTGGCCGGCA TCTGCATCGA TTAGGCTTCG AACTGTTCAC CGAATCGGAT
GAAGGCATGT ACATCTGGAC CCGCCACCCG GCCATTCCGG ACAGTGCCGC GTTGCTGGAC
GATGCGCTGG AGAAAGGCAT CATGCTTGGG CCTGGGCAGT TGTTCATGGT CGACGCCAAA
GCGACCGGGT GGATGCGCTT CAACGTGGCG TTCAGTACGG ACCCGGCGAT GTGGGAGTTG
TTGGAGAAGG TCTTCGTCAA GCATGTGCGC CGGAGTGGGA TGTAG
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| Protein sequence | MFELHPDSST PLVNQIIDGL RELIDNQTLK PGAKVPSIRA FAASYSVSTF TVVEAYDRLV
AQGLLVSRGN AGFFVNRAAG ELLEQHNTEA DTSRPTFNSE WYLQQIFEIR QLPYKPGCGW
LPNDWMYEDG LRRGLRQVAG SPLELSGYGD PMGLMELRAL TAQNLQQELS IVANPAQLML
THGASQALDL AARTLVRPGD VVLVDDPGYP NLMSILRTQG ATLVGVPRTP AGYDLNQLEQ
LLTHHRPTAF FTQPHLHSPT CSRTPLPQLH RLLQLASQHG FRLVENNLYA DMVAEPQPCL
ASLDHLQQVV YVGSYSKSIS PNVRVGYMLA NPELMQKLLH LKMRSGLTTS QVMERVVYAA
IIDGRWRKHL KRLRQRLAEA HQEVGRHLHR LGFELFTESD EGMYIWTRHP AIPDSAALLD
DALEKGIMLG PGQLFMVDAK ATGWMRFNVA FSTDPAMWEL LEKVFVKHVR RSGM
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