Gene Pput_3165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3165 
Symbol 
ID5190415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp3581076 
End bp3581789 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content61% 
IMG OID640587611 
Producthypothetical protein 
Protein accessionYP_001268477 
Protein GI148548375 
COG category[S] Function unknown 
COG ID[COG0217] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01033] DNA-binding regulatory protein, YebC/PmpR family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGCAC AGTGGAAAGC CAAACATAGA GAAACAGCGG CCAATGCCAA AGGCAAGATC 
ATGGGCAAGC TGTCCAAGGA AATCCAGATC GCGGCCAAGT CGGGTGCCGA TCCCGACATG
AACCCGCGCC TGCGCCTGGC CATCGTGCAA GCCAAGAAAG CTTCAATGAC TCGCGAGACC
CTGGATCGGG CAATCCGCAA GGGCGCTGGC CTGGACGGTG ATGCCGTGCA ATACCATGCG
GTGAGCTATG AAGGTTTCGC ACCGCACCAG GTACCGCTGA TCGTCGAGTG CCTGACCGAC
AACATCAACC GCACCGTCGC GCAGATCCGC GTGCTGTTCC GCAAGGGCCA GCTGGGTGCC
AGCGGTTCGG TAGCGTGGGA CTTCAACCAT GTCGGCCTGA TCGAAGCCAC GCCTGCGAGC
GCTGACGCTG ATCCGGAAAT GGCCGCGATC GAAGCCGGTG CCCAGGACTT CGAGGAAGGT
GAAGAAGAGG GCTCGACCCT GTTCATCACC GACACCACCG ACCTGGACGC GGTGCAGAAG
GCCCTGCCGG AGCATGGTTT CACCGTGACT GCGGCAAAAA TCGGCTACAC CCCTAAAAAC
CCGGTAAGCG CGGCCAGCCT GAGTGCTGAA GCGTTGGCCG AGGTCGAAGC GTTCCTCGAG
GCGATCGACG AGCACGATGA CGTGCAGAAC GTCTATGTTG GCCTGACCGA GTAA
 
Protein sequence
MGAQWKAKHR ETAANAKGKI MGKLSKEIQI AAKSGADPDM NPRLRLAIVQ AKKASMTRET 
LDRAIRKGAG LDGDAVQYHA VSYEGFAPHQ VPLIVECLTD NINRTVAQIR VLFRKGQLGA
SGSVAWDFNH VGLIEATPAS ADADPEMAAI EAGAQDFEEG EEEGSTLFIT DTTDLDAVQK
ALPEHGFTVT AAKIGYTPKN PVSAASLSAE ALAEVEAFLE AIDEHDDVQN VYVGLTE