| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3158 |
|---|
| Symbol | |
|---|
| ID | 5190815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3571767 |
|---|
| End bp | 3572630 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640587604 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_001268470 |
|---|
| Protein GI | 148548368 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.259002 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTAG ACCTGCAAGC GTTGTATCCC AGGCTGATCC ACCTGATGCT GGACACGGTA
TTCGTGGTCG ACAGGGACAA CCAGATCGTG TTCGTCAGTG ATGCCTGCAA GACACTGCTG
GGCTACGAGG CCTGCGAACT GATCGGCACG CCGATTACCC GCTACATGCA CCCTGACGAC
CTCGCGGCCA CGCGCGCCTC GATCATGCGG GTGATGAACG GCCAGCCGCA CTACGACTTT
TGCAACCGTT ACCTTCGCAA GGATGGCAGC GTGGTGCACA TTCTGTGGGC GGCCTGCTGG
TCCGAGGAGG CCCAGGCGCG TATCGGCGTG GCGCGGGACG TTACCGCCCA GCGCAAGGCC
GAAGACGAAC TGCGCTTCCT CGCCCATCAT GACCCGCTGA CCCGGCTGGC CAACCGCGCC
ATGTTCAATG AACGGCTGGA CACTGCCCTG GCCGCGGCCC GGCGTTACAA CCGCAGGCTG
GCCTTGCTGT TCCTCGATAT CAATGACTTC AAGCAGATCA ACGACAACCA CGGCCACAGC
GTGGGTGACC GGGTCCTGTG CACACTGGCC CGCCGCCTGG AAAGCTGCGT AGGGGCGGCT
GGCACGGTAG CGCGGATGGG CGGTGACGAA TTCACCGTGT TATTGCCCGA TTGCCCGTCG
CCGGAGGCCA TTGCCACGCA CGTGCAGTAC ATTCTCGCGG TCATGGCTGA ACCGCTCGAT
GCCGAGTTTG CCGGCATCGA TGCACCATCC TGCAGTATTG GCGTGGCCCG CTTTCCCGAA
GACGGCAACG ATGCCGACAT GTTACTGCGC CATGCTGACG GGCACATGTA CCGAATCAAG
CGCCAACGCG CTGCGACTGG CTGA
|
|---|
| Protein sequence | MPVDLQALYP RLIHLMLDTV FVVDRDNQIV FVSDACKTLL GYEACELIGT PITRYMHPDD
LAATRASIMR VMNGQPHYDF CNRYLRKDGS VVHILWAACW SEEAQARIGV ARDVTAQRKA
EDELRFLAHH DPLTRLANRA MFNERLDTAL AAARRYNRRL ALLFLDINDF KQINDNHGHS
VGDRVLCTLA RRLESCVGAA GTVARMGGDE FTVLLPDCPS PEAIATHVQY ILAVMAEPLD
AEFAGIDAPS CSIGVARFPE DGNDADMLLR HADGHMYRIK RQRAATG
|
|---|
| |