| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3137 |
|---|
| Symbol | |
|---|
| ID | 5192240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3532074 |
|---|
| End bp | 3533828 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640587583 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001268449 |
|---|
| Protein GI | 148548347 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2194] Predicted membrane-associated, metal-dependent hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAAACA CTACATCCCC CGCCGCGCAC AAGCGCGTGG ACTGGGCCGG GCTCGGCTGG
CTCTTGCTGT TCTTCTGGTA TTTCTCCGGT GTAACCCAGG CGCTGCTGCT GTTCAGCGGG
ACGACCGGCT TCGCCGGTTT TCGCGATGCG TTATTCCTCA GCAGCCTATG GCTGGCGCCC
GTCCTGTTGC TGCCGCGCTT CACCCGCGCC ACCGCGGCAA TCATTGGTCT GGTGCTGTGG
GCTGCATCGC TGGTGGGCCT GAGCTACTTC GGCATCTATC GCCAGGAATT TTCACAAAGC
GTCATCTTTG TGATGTTCGA GTCCAACACC GCCGAGGCTG GTGAGTACTT CAGCCAATAC
TTCAGCGTGG GGCTGGGCCT GGCACTGGTG CTGTACACGC TGGTCGCGGT AATGCTGTGG
CGGCGCGTGC GCCCGGTCAG CCTGCCGCTG CGCAGCCGAC TGCCGGTGGT CGTGCTATTG
CTGGTGGCCA ACCTGGTCAT GCCGTTCTAC AAGCAGATGG TCACCCAGGA GCGCAACTTC
GCCGATGCGC TCGAAAAAGT GCAGCAGCGA ATGGAGCCGG CCGTCCCTTG GCAGTTGCTG
GTCGGCTACC GACAGTACCG CCAGCAACTG GACAACATGC AGAAACTGCT GGCCCAGAAT
GCCGCACTGC CACCGCTGCA AAACCTGCGA GACAGCAGTG GTACAGCGCC ACGCACCTTG
GTATTGGTGC TCGGCGAGTC GACCACCCGC GAGCACATGC ACCTGTATGG CTATAACCGC
GATACCACGC CCAACCTCGA CGCGCTGGCC GCCAGCGACA AGGGCCTGAC CGTGTTCCGC
GACGTGGTAT CGCCGCGCCC GTACACCATC GAAGTGATGC AGCAGATCCT CACGTTCGGC
GACGAGCAGA ACCCGGACCG CTTCCTCAGC GACCCGTCGC TGATCAACCT GCTGAAACAG
GCAGGCTACA AGACCTTCTG GATCACCAAC CAGCAGACCT TGACCAAGCG CAACACCATG
CTCACCACCT TCTCGCAGCA AACAGACGCG CCGGTGTACC TGAACAACCA GCGCAACCAG
AATGCCCGCC AGTACGATGA CGTGGTGCTG GCACCGTTCG AGAAAGCCCT GCAAGACCCT
GCGCCCAACA AGTTCATCAT CGTGCACCTG CTGGGCACGC ACATGGACTA CCGCTACCGC
TACCCGGACG ACTATGCGCA CTTCGACGAC AAGCAAGGTG TGCCAGCCAA GCTGACGGCG
GACCAGGTAG AAACCTACAA CTTCTATGAC AACGCGGTGC GCTACAACGA CTATGTGGTG
TCGACCCTGA TCAAGCGTTA TGCGGCAGGC AACCCCAACG GGTTCCTGAT GTACCTGTCC
GATCATGGTG AAGACGTGTA CAGCTCCGGT GACCACGACC GCCTGGGGCG CAATGAAGGC
GCACCGACCC GGCCGATGTA CACCATCCCG TTCCTGCTGT GGACCTCGCC TAGCTGGCAG
GCCGAACACC CGCGTGACTT GCAGGCAATG GCCAACCGCC CCTACAGCAG TTCGCATCTG
ATCCATACCC TGTCAGACCT GGCCGGATTG AGCTACGACC GCTATGAACC GGCCAAGAGC
CTGGTGAGCC CACAGTTCGT GGTAGTACCA CGCTGGATCG GCGACCCGTA CCGCAAGGAT
GGCTTGCGCG AGTTCGATCA GCTGCCGCAG GACACGGCCG AAGGGGCACA GGAAACAGCC
AGCACCCGGC AGTAA
|
|---|
| Protein sequence | MSNTTSPAAH KRVDWAGLGW LLLFFWYFSG VTQALLLFSG TTGFAGFRDA LFLSSLWLAP
VLLLPRFTRA TAAIIGLVLW AASLVGLSYF GIYRQEFSQS VIFVMFESNT AEAGEYFSQY
FSVGLGLALV LYTLVAVMLW RRVRPVSLPL RSRLPVVVLL LVANLVMPFY KQMVTQERNF
ADALEKVQQR MEPAVPWQLL VGYRQYRQQL DNMQKLLAQN AALPPLQNLR DSSGTAPRTL
VLVLGESTTR EHMHLYGYNR DTTPNLDALA ASDKGLTVFR DVVSPRPYTI EVMQQILTFG
DEQNPDRFLS DPSLINLLKQ AGYKTFWITN QQTLTKRNTM LTTFSQQTDA PVYLNNQRNQ
NARQYDDVVL APFEKALQDP APNKFIIVHL LGTHMDYRYR YPDDYAHFDD KQGVPAKLTA
DQVETYNFYD NAVRYNDYVV STLIKRYAAG NPNGFLMYLS DHGEDVYSSG DHDRLGRNEG
APTRPMYTIP FLLWTSPSWQ AEHPRDLQAM ANRPYSSSHL IHTLSDLAGL SYDRYEPAKS
LVSPQFVVVP RWIGDPYRKD GLREFDQLPQ DTAEGAQETA STRQ
|
|---|
| |