| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3050 |
|---|
| Symbol | |
|---|
| ID | 5194879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3433140 |
|---|
| End bp | 3434270 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640587496 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001268362 |
|---|
| Protein GI | 148548260 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTC GCATTACATC GTTGCTGTTG ATGATCCAAG GGGCTTGCCT TGCTGCGCAG
GCAAAGGCAG AGGGTTTTCC GACGCTCGCG CGGATTGCGC CGGGTTTTGG TTATTACGGG
CTGGATTACG GCTTCGATGA CACGCTCAAG GTGTACGGCA CCGTGGATGC ATTCGCCAGC
TATCACGACT CACAGCACCA CTCGGGTTTC AGGCTGGCCG GTGGCGGCGC CTGGACCAAC
AAGCTCGGGC TGTACGCACG CAAGGCGCTT GACCCCGATA CCGTCGTGGA GCTTGACGTC
GAGGAGGGTT TCAACCTCAA TGGCGAGGCC CTGGAGGGCA CCTGGGACAC CGTCGGTACC
CTGCGCCTGG CGACAGTCGC CCTGCGCTCG CGCACCCTGG GCAAGCTCGA GTTCGGCAAG
ACCTACGGCA TGGCCACGCC CACCTACGCC GACCCGTTCC TGGCCACCTA TGGCTCGCCC
TACACCTACC TGGCCCTGCC TGCCGCCGGC AAGGGCGCCT ATTACCTTGA CCTGCGCCCC
AAGCACACCC TGGCCTACAC CAGCCCGACC TTCAGCGGCT TCAGCCTCGG TACCGCGCTG
AGCTTCGGCT TCGACGATGC CGCCAGCGCT GGGCGCACCG TGCGTGGCGG TGGCGCCCGG
CTGCAGTACC GCAACAGCCG GGTGATGTTG CTGGCCTCCT ACAACCGTTA CTACAGCGAC
CCGTGGGACG ACGGCGGCGT TTCACGCCAG ACCGCCAACG ATTTCAAGAG CCTGTCGGCG
TTCTACGATT TCGGCCCGCT GGCCACCAGC CTCACCTGGC AGCGTCAGGA CGTGGACCAG
GCCGGCACGC CCAGCACCAC GCTGTACACT TTCGGCATGA TGGCGCCAGT GGGCGAACTG
GACGTGCTGC GCGTGGCGGT GATGCAACGC CAGGTCAGCG CCCGTAACAA GGACGCGTGG
GGTGTGATGA TCGGCTATGA CCATTTCATC AATCCCCGCT GGGCCCTCTA TGGACGCCTC
GGCATGATCG CCAACCAGCG CGCCTCGTCG GTCACCTACG CCGGGTCCCC GGTGGACCAG
GCGGGCGATA ACCCAAGCAA CGTCTCGCTA GGCATGTACT ACCACTTCTG A
|
|---|
| Protein sequence | MNTRITSLLL MIQGACLAAQ AKAEGFPTLA RIAPGFGYYG LDYGFDDTLK VYGTVDAFAS
YHDSQHHSGF RLAGGGAWTN KLGLYARKAL DPDTVVELDV EEGFNLNGEA LEGTWDTVGT
LRLATVALRS RTLGKLEFGK TYGMATPTYA DPFLATYGSP YTYLALPAAG KGAYYLDLRP
KHTLAYTSPT FSGFSLGTAL SFGFDDAASA GRTVRGGGAR LQYRNSRVML LASYNRYYSD
PWDDGGVSRQ TANDFKSLSA FYDFGPLATS LTWQRQDVDQ AGTPSTTLYT FGMMAPVGEL
DVLRVAVMQR QVSARNKDAW GVMIGYDHFI NPRWALYGRL GMIANQRASS VTYAGSPVDQ
AGDNPSNVSL GMYYHF
|
|---|
| |