| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3004 |
|---|
| Symbol | |
|---|
| ID | 5191742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3394742 |
|---|
| End bp | 3395623 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640587450 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001268316 |
|---|
| Protein GI | 148548214 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.961727 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTCT TCCTGGAAAC CTTGATCGGC GGCTTGCTCG CCGGCACCCT GTATTCGCTG
GTGGCCATCG GCTTCGTGCT GATCTACAAG GCCAGCGGCG TGTTCAACTT CGCCCAGGGC
GCGATGCTGC TGTTTGCTGC GCTGACCTTC GTCAGCCTGC ACGAGCAGGG CCTGCCGTTC
GCCCTGGCGT TGGCCCTGAC TGTATTGGTG ATGATCGTCG GCGCGCTGCT GATCGAGCGC
CTGGTGCTGC GGCCCCTGGT CAATCGCTCG CAGATCACCC TGTTCATGGC CACCCTTGGC
CTGTCGTTCA TCATCGAGGG CCTGGCCCAG GGCTTGATGG GCGCCCAGGT ACGCGCGCTG
GATCTGGGCA TCGAGGACGT CCCGCTGTTC GTCGGCGAAC TGATGATCAG CCAGTTCGAC
CTGGTTGCCT CCGGCGTTTC CGCCTTGTTG GTGGCGGTGC TGGCGCTGCT GTTCAACAAG
ACCCGCATCG GTGTGGCCTT GCGGGCGGTG GCCGACGATA CCCGCGCGGC GCTGTCGCTG
GGCATCAACC TCAACCGCAT CTGGCAGATC GTCTGGGCCG TGGCCGGAAT GGTCGGGCTG
GTGGCCGGGC TGCTCTGGGG GGCGCGTCAG GGCGTGCAGT TCTCGCTCTC GCTGGTCGTG
CTCAAGGCGC TGCCGGTGCT GATCATCGGC GGCTTCACCT CGATTGGCGG AGCCATCGTC
GGCGGGCTGA TCGTCGGTGC CGCCGAGAAC CTCGCCGAAG CCTACATAGG CCCGCTGATC
GGCGGAGGCA TCACGCCCTG GTTCGCTTAT TTCCTTGCCC TGATCTTCCT ATACATCCGT
CCGGCCGGCC TGTTCGGCGA CCGGACCACC GAACGGGTAT GA
|
|---|
| Protein sequence | MNFFLETLIG GLLAGTLYSL VAIGFVLIYK ASGVFNFAQG AMLLFAALTF VSLHEQGLPF
ALALALTVLV MIVGALLIER LVLRPLVNRS QITLFMATLG LSFIIEGLAQ GLMGAQVRAL
DLGIEDVPLF VGELMISQFD LVASGVSALL VAVLALLFNK TRIGVALRAV ADDTRAALSL
GINLNRIWQI VWAVAGMVGL VAGLLWGARQ GVQFSLSLVV LKALPVLIIG GFTSIGGAIV
GGLIVGAAEN LAEAYIGPLI GGGITPWFAY FLALIFLYIR PAGLFGDRTT ERV
|
|---|
| |