Gene Pput_2985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2985 
Symbol 
ID5193474 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp3373637 
End bp3374704 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content64% 
IMG OID640587431 
Productinner-membrane translocator 
Protein accessionYP_001268297 
Protein GI148548195 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4177] ABC-type branched-chain amino acid transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.538372 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGTATC GAGAAGCGGG CCAGTTCAGC GTGCGTTACG CCGACGACCG ACGATTCTTT 
CGCCTGCGCC AGGATCGGCT GGGTCTGGCG GCCTTGGTCC TGTTCGCCTT CATCGGCGTG
CCACTGCTGG GCAATGATTA CTGGTTCAGT GCCATCCTGA TCCCATTTCT ACTGCTGTCG
CTGGCCGGCC TAGGGCTGAA CCTGCTGACC GGTTATGCCG GGCAACTGTC CCTGGGTTCG
GCGGCGTTCA TGGCAGTAGG TGCCTTCGCA GCCTATAATT TCGAGCTGCG CGTGGCGTGG
CTGCCGCTGC TGGCCAGCCT GCTGCTCGGC GGCCTGGTGG CGGCGCTGGT GGCCGTGGTG
TTCGGCCTGC CAAGCCTGCG CATCAAAGGC TTCTATCTGC TGGTGTCGAC ACTGGCGGCG
CAGTTCTTCG TGCCATGGGC GCTGACCCGC TTCAGTTGGT TCAGCAACGA CAGTGCCTCG
GGGGTGATCA GCGCGCCGCC GCTGCTGATG GCCGGGTATG ACTTTTCGTC GCCGGCCGGG
CGCTACATGC TGACCCTGGC GGTGGTCAGC GCGCTGTTCT GGCTGGGCGC CAACCTGGTG
CGCAGCGAGC TGGGGCGCAA CTGGATGGCG GTGCGCGACA TGGACACCGC CGCCGCAGTG
ATCGGCATCC CCCTGTTGAA GACCAAACTG CTGGCTTTTG CCATCAGCGG CTTCTACCTC
GGCGTGGCCG GTTCGCTCTG GGCCTTCACC TACCTGGGCA CGGTGGAGCC ACACGGCTTC
GACCTGAACC GCTCGTTCCA GATCCTGTTC ATCATCATTA TCGGCGGCCT GGGCAGCATC
CTCGGGAACT TCCTCGGCGC CGCCTTCATC GTGCTGTTCC CGGTGCTGCT GTCGAACCTG
GCCGGGTTGC TGCCGACCGG GCTGATTGAT GCCGGACAGA TAGAGAACCT ACAGAAGATG
GCCTTCGGCA CGCTGATCAT CATCTTCCTG ATCAAGGAAC CGGAGGGCCT GGCGCGCCTC
TGGCAACGCT TTCGCGAGCG CACTCGGCGT TGGCCGTTGC GCCACTGA
 
Protein sequence
MLYREAGQFS VRYADDRRFF RLRQDRLGLA ALVLFAFIGV PLLGNDYWFS AILIPFLLLS 
LAGLGLNLLT GYAGQLSLGS AAFMAVGAFA AYNFELRVAW LPLLASLLLG GLVAALVAVV
FGLPSLRIKG FYLLVSTLAA QFFVPWALTR FSWFSNDSAS GVISAPPLLM AGYDFSSPAG
RYMLTLAVVS ALFWLGANLV RSELGRNWMA VRDMDTAAAV IGIPLLKTKL LAFAISGFYL
GVAGSLWAFT YLGTVEPHGF DLNRSFQILF IIIIGGLGSI LGNFLGAAFI VLFPVLLSNL
AGLLPTGLID AGQIENLQKM AFGTLIIIFL IKEPEGLARL WQRFRERTRR WPLRH