| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2908 |
|---|
| Symbol | |
|---|
| ID | 5193215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3299506 |
|---|
| End bp | 3300126 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640587356 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001268222 |
|---|
| Protein GI | 148548120 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.906058 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGATCA TGAGTCCAAA GAGAAGAACA CAGGCAGAGC GCGCAATGGA GACCCAGGGC
AAGTTGATTG CAGCGGCCCT GGGGGTTTTA CGGGAAAAAG GTTACGCGGG ATTCCGGATC
GCAGATGTGC CCGGTGCTGC AGGTGTCTCG AGAGGAGCGC AGAGCCATCA TTTCCCGACA
AAGCTTGAGC TTCTGCTTGC CACTTTTGAA TGGCTTTACG AACAGATCAC CGAACGCAGT
CGGGCTCGAT TAGCGAAATT GAAGCCAGAG GATGACGTCA TCCAGCAAAT GCTGGACGAC
GCCGCCGAAT TTTTCCTCGA CGATGACTTC TCTATCAGCC TTGATTTGAT TGTGGCTGCC
GACCGGGATC CAGCGTTACG CGAGGGTATT CAGCGCACGG TAGAGAGGAA TCGGTTTGTC
GTCGAGGATA TGTGGCTTGG TGTTCTGGTG AGCCGTGGTC TTTCGCGTGA TGATGCAGAA
GATATCCTTT GGTTGATATT CAATTCGGTG CGTGGGCTTG CTGTTCGTAG CCTATGGCAG
AAGGACAAAG AACGCTTTGA GCGTGTCAGG AACTCGACAC TCGAAATTGC GCGAGAGCGG
TACGCGAAAT TCAAGCGCTA G
|
|---|
| Protein sequence | MVIMSPKRRT QAERAMETQG KLIAAALGVL REKGYAGFRI ADVPGAAGVS RGAQSHHFPT
KLELLLATFE WLYEQITERS RARLAKLKPE DDVIQQMLDD AAEFFLDDDF SISLDLIVAA
DRDPALREGI QRTVERNRFV VEDMWLGVLV SRGLSRDDAE DILWLIFNSV RGLAVRSLWQ
KDKERFERVR NSTLEIARER YAKFKR
|
|---|
| |