| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2857 |
|---|
| Symbol | |
|---|
| ID | 5193332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3242018 |
|---|
| End bp | 3242965 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640587307 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001268173 |
|---|
| Protein GI | 148548071 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.67216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCGCT TGCCACCTGA CAAGGCCCAG GCGCCTGCCG GCCTCGGTGC CTTGAAGATT
TCCAGCCGTC AGATCACGTT GCTCAATGCC CTGGGCGAAT TCGGCAACCT GCGCCGCGCC
GCCGCCGCGA TGCACACCAC GCAACCGGCC GCCAGCCTGT TGCTACAGCA GCTTGAGGAG
CGCCTGGGGG TACGTTTGTT CGAGCGCCTG CCCCGGGGGA TGCAAGCGAC GCTGTATGGC
GAGGTGATGA TTCGCTATGC GCAAAACGCA TTGCATGAGT TCGATCATGC CCAGGCGCAA
ATCGCCGAAC TGGCGCGCGG GGCGTTGGGC CTGGTGCGGG TGGGCAGCGT CATGGGCCCG
GTACCGGGCG TGCTGACCAA GGCGGTGCTG GCCTACAAGC GCGACCAGCC CAAGGTGCGT
ATCTCGCTGG AAGTGGGCAC CAGCGACACC TTGCTGCCGG CCTTGCTACG CGGTGATTTC
GATATGGTAG TGGGGCGCCT GCCGGATCAG AGCGACAGCC AGGAACTGAA TATCGAGCTG
TTCGACGGCG GTGAGCAGAT GCGCGTAATT GCTCGCGCAG GTCATCCCTT GGCGACAGCC
ACAGGGCTGC AGCTGGCCGA CCTGGTGAGC TTGACGTGGA TCTTGCACCC CATCGGCAGC
CCGATGCGCC GTCGCGTCGA AAGCGCATTG CAGGCCGGTG GCATGGTGCA GTCGCTGGAT
ATCGTCGAAA CCGCTTCGAT CCTGGCGACC ACTGCCATGC TCGAAGCGTC CGAAATGATT
GCGGTGGTGC CCAATGACGT GGCCCAGCAT TATGCCCGCT ATGGCATGGT CGCCATCCTG
CCGGTGGAGT TGCCACTGGC GATGGCCAAC CTCGGCGTGC TGACCCTGCG CTCGCGGCCC
AACTCGGTTG CCCTTGATAC CTTGCTGCGC TACCTGCGGG CACAATAA
|
|---|
| Protein sequence | MSRLPPDKAQ APAGLGALKI SSRQITLLNA LGEFGNLRRA AAAMHTTQPA ASLLLQQLEE
RLGVRLFERL PRGMQATLYG EVMIRYAQNA LHEFDHAQAQ IAELARGALG LVRVGSVMGP
VPGVLTKAVL AYKRDQPKVR ISLEVGTSDT LLPALLRGDF DMVVGRLPDQ SDSQELNIEL
FDGGEQMRVI ARAGHPLATA TGLQLADLVS LTWILHPIGS PMRRRVESAL QAGGMVQSLD
IVETASILAT TAMLEASEMI AVVPNDVAQH YARYGMVAIL PVELPLAMAN LGVLTLRSRP
NSVALDTLLR YLRAQ
|
|---|
| |