| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2780 |
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| Symbol | |
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| ID | 5190269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3160598 |
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| End bp | 3161989 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640587230 |
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| Product | GABA permease |
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| Protein accession | YP_001268096 |
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| Protein GI | 148547994 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.725918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACCC ACAAGAACAA TTTGAGTCAT GGATTGAAAT CACGGCATGT CACTATGCTG
TCCATTGCCG GTGTGATCGG CGCCGGGCTG TTTGTCGGCT CTGGCCGCGC CATCGCCGAA
GCGGGGCCTG CCACCATCCT GGCCTATATC CTGGCGGGCG GCCTGGTGGT GCTGGTGATG
CGCATGCTGG CCGAAATGGC GGTTGCCTCC CCGGACACCG GCTCGTTCTC AACCTACGCT
GACCTCGCCA TCGGCAAATG GGCCGGTTAC ACCATCGGTT GGCTGTACTG GTGGTTCTGG
GTGCTGATCA TTCCGATCGA GGCCAATATC GCCGCTACCA TCATCAACTC CTGGGTCCCG
CAGATGGAGA TCTGGGTGTT GTCGTTGGTG ATCACGTTGC TGCTGACGGC CACCAACCTG
TTCAGCGTGA AGAATTACGG TGAGTTCGAG TTCTGGTTGG CACTGGTCAA GGTGGTGGCC
ATCGTCAGCT TCATCGCCCT GGGTGTTTGC GCCATTTTCG GCCTGTTGCC GGGGTCCGGC
GTCAGCGGCG TCTCGCGCCT GTGGGATACG GGGGGCTTCA TGCCCAACGG CTTTGGTGCG
GTGCTGAGCG CAATGCTGAT CACCATGTTC TCGTTCCTCG GGGCCGAGGT GGTGACCATC
GCTGCGGCTG AATCCGACGA GGCGGGCAAG CATATTTCCA AGGCCACCAA TTCGGTGATC
TGGCGGATAA CGCTGTTCTA CATCCTGTCG ATCTTCATCG TCATCGCATT GGTACCGTGG
ACCGACCCAC GCCTGGCGAC CGAAGGCTCT TATGTCACGG TGCTGGACAC CCTCGGCGTG
CCAAATGCCA AGGCCATCAT CGACTTCGTG GTGCTGACGT CGGTGACCAG CTGCCTCAAC
TCGTCGCTGT ACACCGCCTC GCGTATGGTC TATTCGCTTA GCCGCCGTGG TGATGCCCCG
GCCTGTGCCC AGATAACCAG CCGCAGTGGT ACACCCGTGG TGGCAGTCTT GTTGTCGACG
GGGGCTGCCT TCCTGGCGGT GATCGCCAAC TACCTGGTGC CGGCTCAGGT GTTTGGCTTC
CTCATGGCCA GCTCCGGTGC CATTGCCTTG CTGGTGTATC TGGTCATCGC CATTTCCCAG
CTGCGCCTGC GCCAGCGCCT GACGGCACAG GGTAAGACAC TGGGTTACCG CATGTGGCTG
TTCCCGTGGC TGACCTGGGG CGTGATCCTG TTCATCAGCG GCGTACTGGT ATTGATGCTG
TTCCGCCCGG ATCATCGCCT GGAAGTGGTC TCGACGATGG TGCTGGCGGT GTTGGTGGTG
TGCTCGGGGG TGCTGGTGAC CCGGCGCCGG GCACGCGGCG GGGCGGTGGC TGGCGTAGGG
CAGGGCGCCT GA
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| Protein sequence | MQTHKNNLSH GLKSRHVTML SIAGVIGAGL FVGSGRAIAE AGPATILAYI LAGGLVVLVM
RMLAEMAVAS PDTGSFSTYA DLAIGKWAGY TIGWLYWWFW VLIIPIEANI AATIINSWVP
QMEIWVLSLV ITLLLTATNL FSVKNYGEFE FWLALVKVVA IVSFIALGVC AIFGLLPGSG
VSGVSRLWDT GGFMPNGFGA VLSAMLITMF SFLGAEVVTI AAAESDEAGK HISKATNSVI
WRITLFYILS IFIVIALVPW TDPRLATEGS YVTVLDTLGV PNAKAIIDFV VLTSVTSCLN
SSLYTASRMV YSLSRRGDAP ACAQITSRSG TPVVAVLLST GAAFLAVIAN YLVPAQVFGF
LMASSGAIAL LVYLVIAISQ LRLRQRLTAQ GKTLGYRMWL FPWLTWGVIL FISGVLVLML
FRPDHRLEVV STMVLAVLVV CSGVLVTRRR ARGGAVAGVG QGA
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