| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2763 |
|---|
| Symbol | |
|---|
| ID | 5192451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3140237 |
|---|
| End bp | 3141334 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640587213 |
|---|
| Product | carboxynorspermidine decarboxylase |
|---|
| Protein accession | YP_001268079 |
|---|
| Protein GI | 148547977 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.327061 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGA CGCCGTATTA CCTCATCGAT AAAACCAAGC TGCTCAGCAA CATGGAGAAG
ATCGCCTACG TGCGCGAACA CTCCGGTGCC AAGGCGCTGC TCGCCCTCAA GTGCTTCGCC
ACCTGGTCGG TGTTCGACCT GATGCAGCAG TACATGGACG GTACCACCTC GTCCTCCCTG
TTCGAGCTCA AGCTCGGCCG CCAGAAGTTC GCCGGCGAAA CCCATGCCTA TAGCGTGGCC
TGGGCCGACG ACGAGGTCGA GGAGATGCTT GAGAACTGCG ACAAGATCAT CTTCAACTCG
ATCGGCCAGC TGCAACGCTT TGCCGAACAG TCCGAAGGCA AGGTGCGTGG TCTGCGCGTC
AACCCGCAGG TCAGCAGCTC CGACTACCTG CTGGCCGACC CGGCCCGCCC GTTCAGCCGC
CTGGGCGAAT GGGACCCGGC CAAGATCGAA CAGGTAATCG AACAGATCTC CGGTTTCATG
TTCCACAACA ACTGCGAGAA CGGTGACTTC GGCCTGTTCG ACAAGATGCT CACGCACATC
GAAGAGCGAT TCGGCCACCT GCTGCACAAG GTCGAGTGGG TCAGCCTGGG TGGCGGCATT
CACTTCACCG GTGAAGACTA TGCAGTAGAC GCCTTCTGCG CGCGCCTGAA GGCGTTCTCG
GAAAAATACG GCGTGCAGGT TTACCTGGAG CCGGGCGAAG CCGCCATCAC CAACAGCGCC
TCGCTGGAAG TGACCGTGCT CGATACCCTG TACAACGGCA AGCACCTGGC CGTGGTCGAC
AGCTCGATCG AAGCGCACCT GCTCGACCTG CTGATCTACC GCCTCAACGC CAAGATGGCC
CCCAATGACG GCGAGCATAC CTACATGGTC TGCGGCAAGT CATGCCTGGC CGGTGACATC
TTCGGCGAGT ACCAATTCGA CCGTCCGCTG GCCATTGGCG ATCGCCTGTC GTTCATCGAC
ACGGCGGGTT ACACCATGGT CAAGAAAAAC TGGTTCAACG GGCTGAAGAT GCCTTCCATC
GTGGTCAAGC AGCTCGACGG CAGCGTCGAA GTCGTCCGCG AGTTCGGTTT CGAAGACTAC
GTTTCCAGCC TGTCGTAA
|
|---|
| Protein sequence | MIKTPYYLID KTKLLSNMEK IAYVREHSGA KALLALKCFA TWSVFDLMQQ YMDGTTSSSL
FELKLGRQKF AGETHAYSVA WADDEVEEML ENCDKIIFNS IGQLQRFAEQ SEGKVRGLRV
NPQVSSSDYL LADPARPFSR LGEWDPAKIE QVIEQISGFM FHNNCENGDF GLFDKMLTHI
EERFGHLLHK VEWVSLGGGI HFTGEDYAVD AFCARLKAFS EKYGVQVYLE PGEAAITNSA
SLEVTVLDTL YNGKHLAVVD SSIEAHLLDL LIYRLNAKMA PNDGEHTYMV CGKSCLAGDI
FGEYQFDRPL AIGDRLSFID TAGYTMVKKN WFNGLKMPSI VVKQLDGSVE VVREFGFEDY
VSSLS
|
|---|
| |