Gene Pput_2649 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2649 
Symbol 
ID5194330 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp3027389 
End bp3028771 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content66% 
IMG OID640587101 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_001267967 
Protein GI148547865 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGACA GCAATAGCCT CAAGGACTAC CCCCAGGTAC GGCAACTGGC AATCCGCTCG 
TTGTTCGAGA TCATCGAACA GTCCAGCGAA GGCACGGTGA TCGTCGACCG CCAGGCGCGC
ATCGTCTGGA TGAACGAACG CTACGCTCGG CGCTTTGGCC TGGCCGACGC TGCCTGTGCC
ATCGGCCAGC CGTGCGAAAC AGTGATCCCC GGCAGCCTGA TGCGCGACGT GGTGAGCAAT
GGCCGCCCCA TCCTGCTGGA CATGCTCGAC ACGCCGAACG AGCCGTTGGT GGTCATGCGC
CTGCCCATCC ACGATGACCA GGGCGCGCTG ATCGGCGCCA TTGGCTTTGC CCTGTTCGAC
GAACTGCGCA GCCTGTCGCC GCTGCTCAAG CGCTACGCCA GCATGCAGCA GGAACTGGCC
TCGACCCGCT CGCAACTGCG CGCCCGCCAG GCCAAATACA GCTTCGCCCA GTTCGTAGGC
AGCAGCGCGC CCAGCCTGGA AGCCAAGCGA CGCGCCCGGC GTGGCGCCGG CAGTGATTCG
CCCGTGTTGC TGCTGGGCGA AACCGGCACC GGCAAGGAGC TGCTGGCCCA CGCCATTCAC
GCAGCGTCAG CACGGGCGCA CAAAGCTTTT GTCAGCATCA ACAGCGCCGC CATCCCCGAG
ACATTGCTGG AAGCCGAATT CTTCGGCACC GCGCCGGGTG CCTTTACCGG TGCCGACCGC
AAGGGCCGCA GCGGCAAGCT GCAACTGGCC GAAGGCGGCA CGCTGTTCCT CGACGAGATC
GGCGACATGC CGCTGGCCCT GCAGAGCAAG CTGCTGCGGG TGCTGCAGGA AAAGGAATAC
GAACCGGTCG GGTCGAACCA GATGCTGCGC AGCGATGTGC GCATCATTGC CGCCACCTCC
ATCGACCTGC AGGCTGCCAT GGCCCGCGGG GCCTTCCGCG CCGACCTGTA TTACCGGCTG
AATGTGCTGC CGATCGAAGT CCCGCCGTTG CGACAACGGC TTGAGGACCT GCCCGCGCTG
TGCGAGGCCA TATTGGCTGA GCTGGGCAGC CAGTACGAGC TGGAAGCTGA AGCGCAGCAA
CTGCTGGCCA GGCATGCGTG GCCGGGGAAC ATTCGCGAGC TGCGCAATGT GCTGGAGCGC
GCGACCCTGC TGGCGGATCA GCCCCGGTTG GGGGTGGCGG ACCTGCGTGC GGCATTGGGG
CCATTGAGCC CGCTGGCTGA AGCGCCCGTG CGGCAGCGCT ACCGTGACGC GTGCGAGGCC
TTTGAACGCG GCCTGATTGC CGGGGCGCTG GCCGAACAGG GAGGAAACGT GCCAGAGGCA
GCAGCAGCGT TAGGGCTGGG GCGGTCGACG CTGTACAAGA AGATGGCGGC ACTTGGTCTC
TAA
 
Protein sequence
MHDSNSLKDY PQVRQLAIRS LFEIIEQSSE GTVIVDRQAR IVWMNERYAR RFGLADAACA 
IGQPCETVIP GSLMRDVVSN GRPILLDMLD TPNEPLVVMR LPIHDDQGAL IGAIGFALFD
ELRSLSPLLK RYASMQQELA STRSQLRARQ AKYSFAQFVG SSAPSLEAKR RARRGAGSDS
PVLLLGETGT GKELLAHAIH AASARAHKAF VSINSAAIPE TLLEAEFFGT APGAFTGADR
KGRSGKLQLA EGGTLFLDEI GDMPLALQSK LLRVLQEKEY EPVGSNQMLR SDVRIIAATS
IDLQAAMARG AFRADLYYRL NVLPIEVPPL RQRLEDLPAL CEAILAELGS QYELEAEAQQ
LLARHAWPGN IRELRNVLER ATLLADQPRL GVADLRAALG PLSPLAEAPV RQRYRDACEA
FERGLIAGAL AEQGGNVPEA AAALGLGRST LYKKMAALGL