Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2649 |
Symbol | |
ID | 5194330 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 3027389 |
End bp | 3028771 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640587101 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_001267967 |
Protein GI | 148547865 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACGACA GCAATAGCCT CAAGGACTAC CCCCAGGTAC GGCAACTGGC AATCCGCTCG TTGTTCGAGA TCATCGAACA GTCCAGCGAA GGCACGGTGA TCGTCGACCG CCAGGCGCGC ATCGTCTGGA TGAACGAACG CTACGCTCGG CGCTTTGGCC TGGCCGACGC TGCCTGTGCC ATCGGCCAGC CGTGCGAAAC AGTGATCCCC GGCAGCCTGA TGCGCGACGT GGTGAGCAAT GGCCGCCCCA TCCTGCTGGA CATGCTCGAC ACGCCGAACG AGCCGTTGGT GGTCATGCGC CTGCCCATCC ACGATGACCA GGGCGCGCTG ATCGGCGCCA TTGGCTTTGC CCTGTTCGAC GAACTGCGCA GCCTGTCGCC GCTGCTCAAG CGCTACGCCA GCATGCAGCA GGAACTGGCC TCGACCCGCT CGCAACTGCG CGCCCGCCAG GCCAAATACA GCTTCGCCCA GTTCGTAGGC AGCAGCGCGC CCAGCCTGGA AGCCAAGCGA CGCGCCCGGC GTGGCGCCGG CAGTGATTCG CCCGTGTTGC TGCTGGGCGA AACCGGCACC GGCAAGGAGC TGCTGGCCCA CGCCATTCAC GCAGCGTCAG CACGGGCGCA CAAAGCTTTT GTCAGCATCA ACAGCGCCGC CATCCCCGAG ACATTGCTGG AAGCCGAATT CTTCGGCACC GCGCCGGGTG CCTTTACCGG TGCCGACCGC AAGGGCCGCA GCGGCAAGCT GCAACTGGCC GAAGGCGGCA CGCTGTTCCT CGACGAGATC GGCGACATGC CGCTGGCCCT GCAGAGCAAG CTGCTGCGGG TGCTGCAGGA AAAGGAATAC GAACCGGTCG GGTCGAACCA GATGCTGCGC AGCGATGTGC GCATCATTGC CGCCACCTCC ATCGACCTGC AGGCTGCCAT GGCCCGCGGG GCCTTCCGCG CCGACCTGTA TTACCGGCTG AATGTGCTGC CGATCGAAGT CCCGCCGTTG CGACAACGGC TTGAGGACCT GCCCGCGCTG TGCGAGGCCA TATTGGCTGA GCTGGGCAGC CAGTACGAGC TGGAAGCTGA AGCGCAGCAA CTGCTGGCCA GGCATGCGTG GCCGGGGAAC ATTCGCGAGC TGCGCAATGT GCTGGAGCGC GCGACCCTGC TGGCGGATCA GCCCCGGTTG GGGGTGGCGG ACCTGCGTGC GGCATTGGGG CCATTGAGCC CGCTGGCTGA AGCGCCCGTG CGGCAGCGCT ACCGTGACGC GTGCGAGGCC TTTGAACGCG GCCTGATTGC CGGGGCGCTG GCCGAACAGG GAGGAAACGT GCCAGAGGCA GCAGCAGCGT TAGGGCTGGG GCGGTCGACG CTGTACAAGA AGATGGCGGC ACTTGGTCTC TAA
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Protein sequence | MHDSNSLKDY PQVRQLAIRS LFEIIEQSSE GTVIVDRQAR IVWMNERYAR RFGLADAACA IGQPCETVIP GSLMRDVVSN GRPILLDMLD TPNEPLVVMR LPIHDDQGAL IGAIGFALFD ELRSLSPLLK RYASMQQELA STRSQLRARQ AKYSFAQFVG SSAPSLEAKR RARRGAGSDS PVLLLGETGT GKELLAHAIH AASARAHKAF VSINSAAIPE TLLEAEFFGT APGAFTGADR KGRSGKLQLA EGGTLFLDEI GDMPLALQSK LLRVLQEKEY EPVGSNQMLR SDVRIIAATS IDLQAAMARG AFRADLYYRL NVLPIEVPPL RQRLEDLPAL CEAILAELGS QYELEAEAQQ LLARHAWPGN IRELRNVLER ATLLADQPRL GVADLRAALG PLSPLAEAPV RQRYRDACEA FERGLIAGAL AEQGGNVPEA AAALGLGRST LYKKMAALGL
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