| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2646 |
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| Symbol | |
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| ID | 5192232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3023459 |
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| End bp | 3025258 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640587098 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001267964 |
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| Protein GI | 148547862 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCTTTA CGGTCCAGGC CGCGCCCACC CACGCCCTCA CGGTCTACGG TGAAGCCCCC
CGCTACGCCG CCAGCTTCCG GCATTTCGAC TATGTAAACC CCGACGCCCC CAAGGGCGGC
ATCTTGCGCC GTTCGGCCAT CGAGATCGGC CAGTTCGACC ATATCCTCCC CTACATCGAC
AAAGGCATCG GTGTCAGCGA AGTCGATGGT CTGCTGTACG CGCCACTGGC GGTACGCTCT
TACGATGAAC CCTATACCGT TTACGGCCTG ATCGCCCGGC GCATGGAGCG CGGCCCCAAT
GATGAGTGGC TACGTTTCGA CATCGACCCA CGCGCCACCT TCGCCGATGG CAGGCCGGTG
CGCGCCGAAG ACGTGCGTTT CACCTTCGAA CTGCTGATGA GCAAGGGCAG CCTGAAGTAC
CGGACCCAGT TCGCCGACGT AGCCGGCGTG ACCGTAGAAA GCCTGCACAG CGTGCGATTC
GACTTGAAGC CCGAGCACGG CCGCACCTTG GCGCTGGACC TCGCCAGCCT GCCGGTAATG
CCCGAGCACG ACTGGCAGCA GCGCGATTTT GCCAACGGTG CCGGCTTCGA CAAGCCGGTT
GGCAGCGGGC CATACCGCAT CGGGCGCATC GACAACGGCC GCAGCATCAC CTTCGAACGC
GACCCGACAT GGTGGGCGCG TGACCTGCCG GCCAGCCGTG GCCGCTACAA TTTCGACAAG
CTACGCATCG AGTACTTCGG CGACACCGAA GTGGCGCGCC AGGTACTCAA AGGCGGTGGC
TACGACTACA ACCGTGAGTT CTCCGCCACG GCCTACACCT TGGGCTACAA CGGTGCGCAA
CTGGACGACG GCCGCCTGCA GCGCGCCCAC CTGGGCCCGG CCAAACCGCA AGTGGCTCAG
GGTTTCGTGT TCAACCTCGA CCAGCCGCAG TTCAAGGACC GCCGTGTGCG GCAGGCGCTG
GGTATGTTAT GGGACTTCGA GTGGAGCAAC CGGCAGATGA TGCGCAACCT GTACATCCGC
CAGCAAAGCG TGTTCTCCAA TACGCCGTTG GCCGCTCGCC AGTTGCCGGA TGCGGGTGAG
TTGAAGCTGC TCGCCCCCTT GCGCGGCCAG GTGCCAGATG AAGTGTTCAC CACGGTGTTC
ACCGCCCCGG TCACCGACGG CTCGGGGATC ATCCGTAAAC AGCAGTTGCA GGCCCTGGCC
CTGCTCGAAC AAGCCGGCTG GCACCCCGAA GGCGACCGCC TGGTCAATAG CCAGGGCACG
CCGCTGGCGT TCACGTTCCT CAATGGCCAG GCGGGCCTTG AACGCCTGCT GCTGCCGTGG
AAGCGCAACC TGGCCCAGAT CGGCGTGAGC CTGAACATCC GCAATGTCGA CTCGGCCCAG
TACGTCAACC GGCTGATGGC GCGCGATTAC GACATGATCG TCACCGGCTA CCCGGTCACC
CTGTCGCCGG GCACCGAGTT GTACAACTAC TTTGGCTCGG CAGCCGCTCA CGACCCCGGC
TCGAACAACC TGATGGTTTT GCAGGACCCG GCCGTAGACC ACCTGATCGA CGGCCTGGTC
CGCGCCGACA CCCAGGCCGA CATGCTGCGC CACGCCCATG CCCTGGACCG CGTGCTGCAA
TGGAATTATT ACTGGATTCC CAACTACTAC CCGCCAGGCA GCTCCACCGC CTGGTGGAAC
CGCTTCGGCC TGCCCAAGGT CCAGGCCACC TATGACGAGG GCCTGGACAC CTGGTGGGAG
GTAAGCCCTA CCCCGCTGAC CAACGCGCAG ATGGCCGAAC GCCAGAAGGC CTCGCCATGA
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| Protein sequence | MGFTVQAAPT HALTVYGEAP RYAASFRHFD YVNPDAPKGG ILRRSAIEIG QFDHILPYID
KGIGVSEVDG LLYAPLAVRS YDEPYTVYGL IARRMERGPN DEWLRFDIDP RATFADGRPV
RAEDVRFTFE LLMSKGSLKY RTQFADVAGV TVESLHSVRF DLKPEHGRTL ALDLASLPVM
PEHDWQQRDF ANGAGFDKPV GSGPYRIGRI DNGRSITFER DPTWWARDLP ASRGRYNFDK
LRIEYFGDTE VARQVLKGGG YDYNREFSAT AYTLGYNGAQ LDDGRLQRAH LGPAKPQVAQ
GFVFNLDQPQ FKDRRVRQAL GMLWDFEWSN RQMMRNLYIR QQSVFSNTPL AARQLPDAGE
LKLLAPLRGQ VPDEVFTTVF TAPVTDGSGI IRKQQLQALA LLEQAGWHPE GDRLVNSQGT
PLAFTFLNGQ AGLERLLLPW KRNLAQIGVS LNIRNVDSAQ YVNRLMARDY DMIVTGYPVT
LSPGTELYNY FGSAAAHDPG SNNLMVLQDP AVDHLIDGLV RADTQADMLR HAHALDRVLQ
WNYYWIPNYY PPGSSTAWWN RFGLPKVQAT YDEGLDTWWE VSPTPLTNAQ MAERQKASP
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