| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2631 |
|---|
| Symbol | |
|---|
| ID | 5193199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 3002412 |
|---|
| End bp | 3006215 |
|---|
| Gene Length | 3804 bp |
|---|
| Protein Length | 1267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640587083 |
|---|
| Product | ImcF domain-containing protein |
|---|
| Protein accession | YP_001267949 |
|---|
| Protein GI | 148547847 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.390277 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAT TACTGCGTCT GTTGAAAAGT TTCTGGGTGC TGCTGCCATT GCTGTGGCTG
GCTAGCCTGT TGATTTGCTG GCTGGCCGCG CCGCTGGTGC CGTGGCTGCG TCATCACGTG
CCTGAAGCGC TGGCAATCAT CAGTGCCTGC TTCCTGCTGG TAATCGTGCT GCGCCAATAC
CAGCGCATTC GCGCCGAACA CAACCTGGAG AACCTGCTGC AGATCGAGGT CGACCGCTCG
TGGAATGCCA CTGGCGAGTT CCGTGACCAG CAGGTGCTGC GTGAGCGCCT GAAGCACGCC
ATCGCCATGC TGCGCACCGA CCGCTCCGCG GGTGGCGGCG GCAAGGCGGC CCTGTCCGAC
CTGCCCTGGT ACCTGGTGGT CGGCATGTCG GCGGCCGGTA AGACCTCGCT GCTGACCCAT
TCCGGCCTGT CGGCCAGCAT CGCTACGGCC AACGACAGCG AAAGCGGCAC CCAGCACTGC
GACTGGTACT TCAGCCCCGA CGCCGTGATG ATCGACACCG CCGGGCGCTA CCTGCGCGAC
GACCAGTCGG CCAGCGAGTT CTCGGCCTTT CTGCGCATGC TGCGAAAGCA GCGCGGCAAA
GCGGCGATCA ATGGCCTGGT GCTTGTGGTC AGCCTGCCCG AGCTGCTGGC GGCCAACAGC
GATGAGCGCA ATGCCCTGGC GGCCCAGTTG GTGGCACGGG TGGAAGAATA CGCCGAATGC
CTCGATGCCA ACCCGCCGGT TTACCTGATG CTGAGCAAGA CCGACCAGTT GCCGGGTTTC
AGCCAGGCTT TCGACGGCCT CGACCTGCAC GAACGCCAGC AGCCGCTGGG CATGACCTTT
GGCCTTTCGG AAATCCGCAC CAACGGCCTG CACGCCGTGC TGAAGACGCG CCTGAAGAAA
CTGCAGGCTC ATATTCGCCA GCACGTCGAC GCACAGATGA TCGCCCTCGG TGCCGAAGCC
GACAGCACCC TGCTGAATTT CCCGCAGTAC TTCGCCGCCC TCAGCGGTGT GCTCGAGCAA
TTCCTCGACC ACTTCACCCG CGGCCATCGC GGCGGTGCCC CGCTGCTGCT ACGTGGCCTG
TACTTCACCA GTGCACTGCA GAACGGGCAG CAACTGGGGC AGGTCTATGA AGACGTCATC
GCCGACGAAT TCGCCCTGCA GGCGGCCTAC GATGAGCAGG CCGGGCACGT CGGCAAGGCC
CTGGGCAACC GCAGCTACTT CATCACCGAC ACCTTCCGCC AGGTGATCTT CCCCGACCGC
GACCTGATCC TTTACCAGTC GCGCCTGGGC CGCCAGGCTG CGTTCAGCCC GCTGCTACTG
GGCCTGGTCG CCGCCACCGG GTTGCTGTTC ATCGGTTGGC AAGCGCTGTC GTTCGCCAAT
AACCGCCAGT GGCTGGACAG CCTGCGTGGG CAGCTGGCGC ACATCGAGCA GGCAGCAGAC
CGCGAGCAGC AGCTGGCCGC AGGCAAGGGC CTGGAAGTGC TGCGTGAGCA GATGGCCAAC
GTCGAGGCCC ATCGCCTGCA GGGAGTGCCC TTGCAGTTGG GTGGCGGCCT GTACCAGGGC
GAGGCGATTC ACCAGGTGAC CCGCAGCGCC TACCTGGCGC AGCTGCGCAG CCAGGCGCTG
GAACCGATCG CACGCAGCCT GCAGGTGCAG ATGCGGGCGT TCAACACCTT CGCCAACGGT
ATCAATCAGG AGCTGGAATT CACCCCGGCC CCGCAGCCGA AGAAGCGCAA TGGCAAGCCG
CTGGCCCCTG CCATTGCGGC CAGGGCCCAG GCCGCGCTGG GCAACACCCG CGCTGGCGCC
TATGCCGCCA AGGTCAACCT GGCCACTGCC AGCGATGGCG CCGAGCTGTC CGCCGCCACC
GGTGGGCTGT CACTGTCCGA AGAAATGCTC GGGCGCCTGG ACGAGCAGCA GGTGGCCTCG
ATCATCGAGG CCTACAACAC CCTCAAGCTG TACCTGTTGC TGACCGAGCC CCAGGCCCAT
CCAGACCCGG CCTTCGTCGC TGCCAGCCTG CCCCAGGCCT GGGCCAGCGC CGCCGCCGAA
GGCACCCCGG CCGACGCTGG CGTGATCGCG GAAAATGCCC CGCTGTACGT GCAGTTGCTG
GAGCAGGGCC AGGCGCCGTC GTTGCCGCGC AACGAACAGC TGATCAACGA AACCCGGCAG
AACCTCAAGT CGTTCATGAT CTCCAGCTCG CTGGTCGATC GCGAGTACCT GCGCCTGCAG
CTCGAGTCGA GCCGGCAGTT CCCGGCGCTG AGCCTCAACG ACCTGGTCCC GCAACCAGGC
CGCACGCTGC TGTACGGAAC CGCGGGTGTG CCGGCGATCT ACACCCGCCA GGGCTGGGAC
ACCTTCGTCA AGCCCGAGCT GATCAAGCTG GTGTCGGGCA ACCTGCGCAA CGAGTCGGAC
TGGGTGCTGG ACGGCGAAGG CGGCGATGCC ATCGTGCAGA AGGCCAACTT CGTACGCGAG
TTCATGACCC GCTACAAGCG CGACTACACC CAGGCCTGGT ACAAGATGGT CAGCAGCGTT
GGCGTGCGCC ACTTCGCCGA CCTGGCCTCG GCGACCCGGG AACTGGGGCT GTTGAGCGAC
GTGCAGAACT CGCCAGTGAA GAACCTGCTG CAGGCCGTCA ACGACAATAC CCAGTGGGAC
CTGCCGGTCA AGCAAGCCAT CCCGGCCCCC GGCACCAGCC GCGATGACGG TTTCTGGAGC
AAGGTCACCG GTCTGTTCGA CGCCAACGAC ACCCTGCCTG CCAACGTCGC CCCGGCCCTG
CCGGCGGTGG ACGACGGCAG CCTGGCCAAG CGCTTCGAGC CGGTGGCGCG GGTGTTCGCT
GAAAACAACG CCGAAGGTGC CGACAGCACC ATCATGGACC GCTACCTGGC CGCCTTGCGC
AAACTCAAGG TGCGCATGAA CAACATCCAG CGCTCGCAGG ATGTGGGCAA GAGCAGCAAA
CAGTTGATCA GCGAGACCCT GGAAGGCCAG CCGAGCGAGA TCACCACCGT GCGCAACTAC
GTGGAAAGCA GCGTCGACAC CAGCCAGGAT GGCCTGTCGC GCTCGCTGCA GGGGCTGTTC
AGCCTGCCCA TCCAGTATGC CTGGGCGACC CTGCGCGACC CGGCCGGCGA GCAGATCGCC
AAGGCCTGGG CGCAGCAGAT CGCCAAGCCC TGGGAGCAGG TCATGGCACA CCGTTACCCG
ATTGCCGGCA GCAGCCGCAA CGAGGCTTCG GTGAAAGACC TGCAACGCTT CGTAGATCCC
GACAGCGGCC TGCTGCCGGC CTTCAAGCGC AACGAAATCG GCAACCTGGC CGGTGGTGAA
GGTCTGGGTG TGGGCGATGG CAAGGGGCCG GCGCTGGTCA ACCCTGGCAT GCTCAACAGC
ATCGACAAGG CCAGCTCCGT GGGCCAGGTG ATCGCCAGCC TGTCGGACCG TGACAACGGC
TTCGAAATCA TGCTGGAGCC TTCAGCCAAC TTCACCGACA TCGTCTTCAC CCTCGATGGC
CAGGAGCAGC ACTACCGCAA CGGCCGCAGC AGCTGGAACC GCTTCGCCTG GCCGGGCACC
AGCACCGCGC CGGGCGCGCG CCTGGACGTC GTCACCCTGA GCGGCACACG GGTCACCGTG
TTCGATTTCC CAGGGCGGTG GGGCCTGCTG CGCATGAACG AGAGCGCTCG CGTCGACGAC
CTGGACGGCA TTCAGCAACG CTTTAGCTGG AACACCGCCA GTGGCCGCGT AAGCCTTGTC
GTGCGCAACT TCGGTGGGGT CAAGCTGACC GATCTGGGTG ACGTCAAGGC CCTGAGCGCC
CTCAACAGCA GGGGCGCGCA ATGA
|
|---|
| Protein sequence | MKTLLRLLKS FWVLLPLLWL ASLLICWLAA PLVPWLRHHV PEALAIISAC FLLVIVLRQY
QRIRAEHNLE NLLQIEVDRS WNATGEFRDQ QVLRERLKHA IAMLRTDRSA GGGGKAALSD
LPWYLVVGMS AAGKTSLLTH SGLSASIATA NDSESGTQHC DWYFSPDAVM IDTAGRYLRD
DQSASEFSAF LRMLRKQRGK AAINGLVLVV SLPELLAANS DERNALAAQL VARVEEYAEC
LDANPPVYLM LSKTDQLPGF SQAFDGLDLH ERQQPLGMTF GLSEIRTNGL HAVLKTRLKK
LQAHIRQHVD AQMIALGAEA DSTLLNFPQY FAALSGVLEQ FLDHFTRGHR GGAPLLLRGL
YFTSALQNGQ QLGQVYEDVI ADEFALQAAY DEQAGHVGKA LGNRSYFITD TFRQVIFPDR
DLILYQSRLG RQAAFSPLLL GLVAATGLLF IGWQALSFAN NRQWLDSLRG QLAHIEQAAD
REQQLAAGKG LEVLREQMAN VEAHRLQGVP LQLGGGLYQG EAIHQVTRSA YLAQLRSQAL
EPIARSLQVQ MRAFNTFANG INQELEFTPA PQPKKRNGKP LAPAIAARAQ AALGNTRAGA
YAAKVNLATA SDGAELSAAT GGLSLSEEML GRLDEQQVAS IIEAYNTLKL YLLLTEPQAH
PDPAFVAASL PQAWASAAAE GTPADAGVIA ENAPLYVQLL EQGQAPSLPR NEQLINETRQ
NLKSFMISSS LVDREYLRLQ LESSRQFPAL SLNDLVPQPG RTLLYGTAGV PAIYTRQGWD
TFVKPELIKL VSGNLRNESD WVLDGEGGDA IVQKANFVRE FMTRYKRDYT QAWYKMVSSV
GVRHFADLAS ATRELGLLSD VQNSPVKNLL QAVNDNTQWD LPVKQAIPAP GTSRDDGFWS
KVTGLFDAND TLPANVAPAL PAVDDGSLAK RFEPVARVFA ENNAEGADST IMDRYLAALR
KLKVRMNNIQ RSQDVGKSSK QLISETLEGQ PSEITTVRNY VESSVDTSQD GLSRSLQGLF
SLPIQYAWAT LRDPAGEQIA KAWAQQIAKP WEQVMAHRYP IAGSSRNEAS VKDLQRFVDP
DSGLLPAFKR NEIGNLAGGE GLGVGDGKGP ALVNPGMLNS IDKASSVGQV IASLSDRDNG
FEIMLEPSAN FTDIVFTLDG QEQHYRNGRS SWNRFAWPGT STAPGARLDV VTLSGTRVTV
FDFPGRWGLL RMNESARVDD LDGIQQRFSW NTASGRVSLV VRNFGGVKLT DLGDVKALSA
LNSRGAQ
|
|---|
| |