| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2618 |
|---|
| Symbol | |
|---|
| ID | 5193608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2986840 |
|---|
| End bp | 2988696 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640587071 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_001267937 |
|---|
| Protein GI | 148547835 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.576781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCATGG ACTTGGCCTC CGCGCTGCTG TCGCCACAGA ACCGCCGCCT GTTCAAGTTT
CACAACCTCG CCAACCCCGA GCAGGAGCTG CTGCTGGAAA CCTTCAAGGG CACCGAAGCC
CTGTCGCGGG CGTTCAACTA CGAACTGCTG CTGGTCTGCG AAGACTCCGG CGTGCCGCTC
AAATCCATGA TGGGCCAGCA CGTCAGCATC GAAATCGAAC TGGCCGAAGG CGGCCCGCGG
TACATAACCG GCTACCTCAC ACGCTTTGCC AGCATCGGCA GCGACGGCGG CATGGCACGC
TATACCGCCA CCCTCAACCC GTGGTTCTCG ATGCTGAAGA ACCGCTTCGA CACGCGGATC
TTCCAGGGCA ACACGGTCGA GGAAGTGGTT ACCGAAGTGT TCGCCCTGTG CCCGGCGTTT
TCCCGCCACG AGTTTCGCCT GACCCGGCCA CAGAAGCGCT ACACGTACAT CACCCAGTAC
CGCGAAACCG ACTTCAACTT CGTCCAGCGC CTGCTGGAGG AAGAGGGGAT GTTCTACTAC
TTCGAGCACA CCGCCGAAGG CCACACCATG ATCATCTGCG ATGACTCCAG CACGCTGGTG
GCCATCCCCG AGCAACCGCA AATCCGCTTC CACAGCGCCT CCGTCACCGA GACCGCCGAC
TCCATCACCC AGTGGAGCGG CAACCGTCAA CTGCAATCCG GCAAGATGGC CACGCAAACC
TTTGACTACC GCCAACCGAA CAACCGCCTG CCGGTGGCGC TGAACAGCGT GAACAATCAG
GGCGATGTCG AGAACTTCGA GATCTACGAC TTCCCCGGCC AGTACACCCA CGGTACCTAT
GACGAAGGCG AAACCCTGCT GCGCCTGCGC ATTGAGGCGC TGGAGCTGCG CGGCAAAAAG
TTTGAAGGCG CCAGCAACTG CCGGGCCATG AAGCCGGGCT ACACCTTCGA ACTGCTGCAG
CACTACATCC ACGACCAGGG GCCGGTAGAA GACCGTCAGT TCCTGCTGAT GAGCGTGGAA
AGCGAAGGCC ACAACAACTA CCTTACCGGC CAGCAGGCCA GCTACTTCAA CACCTTCAGT
TGCGTGCGCA AGAAGATCCC GTTCCGCCCG CAACTGAGTA CGCCCAAACC GACCATTGCC
GGCCCGCAGA CCGCGATCAT CGTCGGCCCA CCGGGTGAGG AGATCTTCAC CGACGAACTG
GGCCGGGTGA AAATCCAGTT CCACTGGGAC CGCAATGGCA AGTACAACGA CCACAGCTCG
TGCTGGGTAC GTGTCGCCCA GTCCGGTGCC AGCGGTGGCT TCGGTAGCAT CCAGATTCCG
CGCGTAGGCG ACGAAGTGGT GGTGGTGTTC CTCGACGGCA ACCCGGACCG GCCGCTGATC
ATGGGCAGCC TGTACAACAG CACCAACACC CCGCCATGGT CGCTGCCGGC GAACAAGACC
CAGAGTGGGT TCCTGACGCG GTCGATGAAG GGCGACGGCG GTACCGCCAA CTTCTTCCGC
TTCGAGGACA AGGCCGGCGC CGAGCAGATC ATCATGCATG CCGAGCGCAA CATGGATACC
GAGATCGAGC TGGATGAGAC CCATGATGTG GGGAATAACC GCTCGATTAC TGTTGGTGGT
ACGCACACCG AAACGGTCAA GAAAGACACC GTGGTGCAGG TGACCGAAGG TTCCTACACC
CTGCAGGTCG ACAACCAGTT CATCCAGGTG GCCGCCAAGC AGCACATCAT CCTGCAGGTG
GGCGACAGCA GCATCACGCT GACCCCGGAA GGCATCGAGA TCAAAGGCAA GGTCATCGTG
ACCACCAGTA CCGACACCAC CCAGATCACC GGCGCCGCAG TGCGGATCAA CGACTGA
|
|---|
| Protein sequence | MIMDLASALL SPQNRRLFKF HNLANPEQEL LLETFKGTEA LSRAFNYELL LVCEDSGVPL
KSMMGQHVSI EIELAEGGPR YITGYLTRFA SIGSDGGMAR YTATLNPWFS MLKNRFDTRI
FQGNTVEEVV TEVFALCPAF SRHEFRLTRP QKRYTYITQY RETDFNFVQR LLEEEGMFYY
FEHTAEGHTM IICDDSSTLV AIPEQPQIRF HSASVTETAD SITQWSGNRQ LQSGKMATQT
FDYRQPNNRL PVALNSVNNQ GDVENFEIYD FPGQYTHGTY DEGETLLRLR IEALELRGKK
FEGASNCRAM KPGYTFELLQ HYIHDQGPVE DRQFLLMSVE SEGHNNYLTG QQASYFNTFS
CVRKKIPFRP QLSTPKPTIA GPQTAIIVGP PGEEIFTDEL GRVKIQFHWD RNGKYNDHSS
CWVRVAQSGA SGGFGSIQIP RVGDEVVVVF LDGNPDRPLI MGSLYNSTNT PPWSLPANKT
QSGFLTRSMK GDGGTANFFR FEDKAGAEQI IMHAERNMDT EIELDETHDV GNNRSITVGG
THTETVKKDT VVQVTEGSYT LQVDNQFIQV AAKQHIILQV GDSSITLTPE GIEIKGKVIV
TTSTDTTQIT GAAVRIND
|
|---|
| |