| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2550 |
|---|
| Symbol | |
|---|
| ID | 5191962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2904107 |
|---|
| End bp | 2905435 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640587003 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001267869 |
|---|
| Protein GI | 148547767 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00895] benzoate transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACCC TTGATGTACA CCCGATCATC GACAATGCGC GCTTTTCCCC GTTTCACTGG
ATGGTCATGG CCTGGTGCGG CCTGCTGCTG ATTTTCGACG GCTATGACCT GTTCATCTAC
GGTGTGGTAC TGCCGGTCAT CATGAAAGAG TGGGGCCTGA CCCCGTTGCA GGCCGGTGCA
CTGGGCAGCT ATGCGCTGTT CGGCATGATG TTCGGCGCCC TGGCCTTCGG CAGCCTGGCC
GACCGCATTG GGCGCAAGAA GGGCATTGCC ATCTGTTTCG CCTTGTTCTC GGGGGCGACC
ATCCTCAACG GCTTTGCCAG CAGCCCGAGC GAGTTTGGCA TCTACCGCTT CATCGCCGGC
CTGGGCTGTG GTGGCCTGAT GCCCAACGCC GTGGCACTGA TGAACGAATA CGCGCCCAAG
CGCCTGCGCA GCACGCTGGT GGCGATCATG TTCAGTGGCT ATTCACTGGG CGGCATGCTG
TCGGCAGGTG TCGGCATTTT CATGCTGCCG CGTTTTGGCT GGGAGTCGAT GTTCTTCGCC
GCAGCGGTGC CTCTGCTGCT GTTACCGGTG ATTCTTTACT ACCTGCCTGA ATCCATCGGT
TTCCTGGTGC GCCAAGGCCG TATCGAGGAA GCACGCTCAC TGCTCAAACG GCTGGACCCG
GACTGCGATG TCCAGGCCGA TGATGTGCTT CAGGCGGCCG ACCGCAAAGG CAGCGGTGCT
TCGGTGCTGG AACTGTTCCG CAATGGCCTG GCGATTCGCA CCCTGGCACT GTGGGTTGCG
TTCTTCTGCT GCCTGCTGAT GGTCTACGCC CTGAGTTCCT GGCTGCCAAA GCTGATGGCC
AACGCCGGCT ACAGCCTGGG CTCAAGCCTG TCATTCCTGC TGGCCCTGAA CTTTGGCGGC
ATGGCCGGGG CAATCCTCGG CGGCTGGCTG GGCGACCGCT ACAACCTGGT CAAGGTGAAG
GTGGCGTTCT TCATTGCCGC CGCACTGTCG ATCAGCCTGC TGGGGGTGAA CAGCCCGATG
CCGGTGCTGT ACCTGCTGAT CTTCATTGCC GGCGCCACCA CCATTGGTAC GCAGATTCTG
CTGTATGCCG GCGCGGCGCA GATGTACGGC CTGTCGGTGC GCTCTACCGG CCTGGGCTGG
GCCTCGGGCA TCGGCCGTAA TGGCGCCATC GTCGGCCCGC TGCTGGGCGG TGCGCTGATG
GGCATCAACC TGCCACTTCA ACTCAATTTC ATCGCCTTCG CCATTCCTGG CGCCATCGCC
GCGCTGGCCA TGGCCGTGCA CCTGGCCAGT GGTCGGCGCC ACGCCCAGGC CCTGGCGGCG
CAGGCCTGA
|
|---|
| Protein sequence | MRTLDVHPII DNARFSPFHW MVMAWCGLLL IFDGYDLFIY GVVLPVIMKE WGLTPLQAGA
LGSYALFGMM FGALAFGSLA DRIGRKKGIA ICFALFSGAT ILNGFASSPS EFGIYRFIAG
LGCGGLMPNA VALMNEYAPK RLRSTLVAIM FSGYSLGGML SAGVGIFMLP RFGWESMFFA
AAVPLLLLPV ILYYLPESIG FLVRQGRIEE ARSLLKRLDP DCDVQADDVL QAADRKGSGA
SVLELFRNGL AIRTLALWVA FFCCLLMVYA LSSWLPKLMA NAGYSLGSSL SFLLALNFGG
MAGAILGGWL GDRYNLVKVK VAFFIAAALS ISLLGVNSPM PVLYLLIFIA GATTIGTQIL
LYAGAAQMYG LSVRSTGLGW ASGIGRNGAI VGPLLGGALM GINLPLQLNF IAFAIPGAIA
ALAMAVHLAS GRRHAQALAA QA
|
|---|
| |