| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2534 |
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| Symbol | |
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| ID | 5192147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2883967 |
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| End bp | 2886294 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640586987 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001267853 |
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| Protein GI | 148547751 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATTCGCC GTTCGCTTTC CTCCTCCAGC CTTCTGCGAC TGCTGATCCT GATGCTCTGT
GCAGCGACCC TGGCCTTTCT CTGGGGGCTG CACGTCACGC AGAAAGCCAC CGCCCGACAG
GGTGCACTGT CGGCCAAGGC CATCGAGCAC CTGAACCTGG CCAGCATCGT GGGCGAAAAC
CTGCGACAGC TTGTCGACCG CGCCCAGGCG GTGGGTCGTG TTACCCAGGA CGACATGAAA
GCGCTGCGCC AAGGCAACTT CAGCCTGGTA CCCAGCCTGG CCGCAGACCC AGTGTTCAAG
CGCTTGAGCC TGTACGACCG ACAAGGCCGG CTGCTAGCGG CCAGCCACGC CGATGAGGCC
GCCGAGTTGC CGGCAGACTG GTTGCACCAA CTGCTGCGGC ACATTGACCG CTACGGTTTC
AAACCTTTCC TGCCGAGCAT TCAGCCTGTC AGCCAAAACG CTGCCCCGCC CACTGGGCGC
CTGCCCTTCC TGCTGCCGTT GACCAATTCG ACCGGCCGGG AAATCGACAA CCTTTTGGTG
GTGCAATTGG ACGTCGGCTA CCTGGCGGTG CTGTTCCAGC CTATCGACCT GGGCAACAGT
GGCCTGGTGC GTCTGCTGCA GGATGACGGC CTGGAGCGGC TGCGCCTCGA CAACAGCGGC
GTGGTGACTG CGGGCGACCT ATTGCAGCCA CCGCTGCCGG CACTAAACAC CGAAGCGGGC
ATGCTGACCC AATACGTAGC GGGTGATGCC TACCAAAGCT TGTACCGCCA TGTACCCGAG
CACGGCTTCA GCGTGGTGGT CAGCCAGCGC CAGGCAGAAA TCCTCGCACC CTCGACGCTG
GCCTATTCCC GGCAGTTCTG GTTGAACCTG AGCATGACCC TGATGATCCT GGCCAGCCTG
CTATGGACCT TGCGCCTGCT GCGCAAGCGC CAGGAGGCCT TCGACGCGCT CGAACATGCC
CAGCAGGTCA ATCAGCAACT GATCGTGCGC CTGGAGGACG AACACCGGCG CAGCAGCCAC
GCCGCCGCCA CCGACCACCT CAGCGGCCTG CACAACCGCC GCCAGTTCGT CGAAGTGGCC
AGCCAGGCGC TGACTCGGCA ACGTGGCAAG CGCCGACTGA TGGCGATCCT GTTCATCGAC
ATGGACCGCT TCAAGTCGAT CAACGACTCG CTCGGACACA AGATTGGCGA CCTGCTGCTA
CAGGCTGTGG CCGGGCGTAT CCAGCGCCTG CTGGAGCCCG GCGACGAGGC TTCGCGCTTT
GGCGGCGACG AATTCGTGGT GCTGCTGGCC GGCGAGCGCA GCGAGGAGCA GATCAACGCC
TGGGTCCACG AACTGGTGCA GAAACTGTCG GCCGCGTACG CCCTGGATGG CCAAGAGGTC
AACACCAGCC CCAGCGTAGG GGTGAGTATC TGCCCGCGTG ATGGCCAGGA CATCGACAGC
CTGATACGCA GTGCCGATGC TGCAATGTAC TCGGCCAAGC AGGCAGGACG CGCGCAGTAT
CGCTTTTTCG ACCCCTCGCT CAACCTGGCC GATGTCCAGG CTTTCACCCT TGAGCAAGCG
TTCGGCAGTG CCTTGGCCGA ACGCCAGTTC GTGCTGCACT ACCAGCCACA GATGCGCCTG
GACACCCACC AGGTGCTGGC CTACGAGGCG CTGGTGCGCT GGGACCACCC TGATTTCGGC
CTGTTGTACC CGGACCGCTT CATCGGCCTG GCCGAGCGCA GTGGTTTCAT TGTCGAACTG
GGTTGGGAGG TGCTGCGGCT GGCCTGTGAA GCCTTGTCGA GCTGGAATGC CCAAGGCCGC
AAGACACGGC TGGCAGTCAA TGTCTCCGCC CTGCAGCTGC GTCAAGCCGA TTTCGCTGAC
CGGCTGCTGA GCAAATTGCA GCATCACGGC ATCGCGCCCC AGCAGCTGGA GCTGGAAATT
ACCGAAACCA CCATCCTCGA CCCCGAAGGC ATGGCGGTGG CGCACCTGCA TACGTTGCGC
GGCGCAGGTT TGGGTATCAG TCTGGACGAT TTTGGCCGTG GCTACGCCGG CTTTGCCCAC
CTGCATTCAC TGCCCCTGAG CAAGCTGAAG ATTGATCGTT CGCTGATCGC GGCGCTGTCC
AACAGCCATG ACGACAGCCC TATCGTGTCC TCCACCATCA TCCTGGCCAA GCGCCTGGGC
CTGGAAGTGG TGGCCGAGGG GGTGGAAACC CGTGAGCAGG TGGTGTACCT GAAGCTTGCC
GGCTGCGATA TCGCCCAGGG CTACCACTTC AGCCGGCCAC TGTCGCTGCC ACAGCTGTGG
GTTTACCCGC CCTTCAACGG TATCGAGGAC AAGGCATGCG TGTACTGA
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| Protein sequence | MIRRSLSSSS LLRLLILMLC AATLAFLWGL HVTQKATARQ GALSAKAIEH LNLASIVGEN
LRQLVDRAQA VGRVTQDDMK ALRQGNFSLV PSLAADPVFK RLSLYDRQGR LLAASHADEA
AELPADWLHQ LLRHIDRYGF KPFLPSIQPV SQNAAPPTGR LPFLLPLTNS TGREIDNLLV
VQLDVGYLAV LFQPIDLGNS GLVRLLQDDG LERLRLDNSG VVTAGDLLQP PLPALNTEAG
MLTQYVAGDA YQSLYRHVPE HGFSVVVSQR QAEILAPSTL AYSRQFWLNL SMTLMILASL
LWTLRLLRKR QEAFDALEHA QQVNQQLIVR LEDEHRRSSH AAATDHLSGL HNRRQFVEVA
SQALTRQRGK RRLMAILFID MDRFKSINDS LGHKIGDLLL QAVAGRIQRL LEPGDEASRF
GGDEFVVLLA GERSEEQINA WVHELVQKLS AAYALDGQEV NTSPSVGVSI CPRDGQDIDS
LIRSADAAMY SAKQAGRAQY RFFDPSLNLA DVQAFTLEQA FGSALAERQF VLHYQPQMRL
DTHQVLAYEA LVRWDHPDFG LLYPDRFIGL AERSGFIVEL GWEVLRLACE ALSSWNAQGR
KTRLAVNVSA LQLRQADFAD RLLSKLQHHG IAPQQLELEI TETTILDPEG MAVAHLHTLR
GAGLGISLDD FGRGYAGFAH LHSLPLSKLK IDRSLIAALS NSHDDSPIVS STIILAKRLG
LEVVAEGVET REQVVYLKLA GCDIAQGYHF SRPLSLPQLW VYPPFNGIED KACVY
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