| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2529 |
|---|
| Symbol | codB |
|---|
| ID | 5193147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2876213 |
|---|
| End bp | 2877478 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640586982 |
|---|
| Product | cytosine permease |
|---|
| Protein accession | YP_001267848 |
|---|
| Protein GI | 148547746 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1457] Purine-cytosine permease and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0365158 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCAC CCAGCGAATT TCCACTCAGC GAAGCCCCCC AGTCCGCCCG CAAGGGCCTG
CTGCCGATCG CGATGGTCTT GTTCAGCTTC ACCTTCTTTA CCGGCACGAT GTTCGCCGGC
GGCAAGCTGG GCATGGCATT CAGTTTTGTC GACATGCTGT GGGTGGCTAC CCTCGGCAAC
AGTTTGCTTG CCTTGTATGC CGCAGTGCTG GCCTTCATCG CCTCACGCAG CGGGCTGAAT
ACCGTGTTGA TGGGGCGCTT CTGTTTTGGT GAAGCGGGGA GCCGGCTCTC GGACTTTCTG
CTGGGTTTTG CCGAACTGGG CTGGTATGCC TGGGGTACGG CCACGGTGGC CATCGTGCTG
GTCAAGCTGC TGGGGCTGGC GGATGGTTTC GGCATGCCGT TGATGGTGCT GTTCGGGCTG
GGTTTCAGCA TTACGGCCAT CATCGGGTTC AAGGGGCTGG ACCTGTTGTC GCGGGTGTCG
GTGCCATTGA TGTTCGTGCT GCTGTTGGTG TCCATGTACA TCGCCACCCG CGATGCCGGT
GGCTTTGCCG GCCTGGCTGC AGTCGTCCCG CATGAAACCA TGACCTTTTC GGCGGCAGTG
ACCATGGTCT TCGGCACCTT CGCCAGTGGC GCCACCCAAG CCACCAACTG GACACGGCTG
GCACGCAATG GCCGGGTAGC GGTGATCGCC AGCGTGGTGG CATTCCTCCT TGGCAACGGC
CTGATGGTGG TGGCCGGGGC GTGGTGCGCG ATGGTTTATC AGCAGGCCGA TATCGTCGAC
GTGATGATGC TGCAGGGCCT GTCGTTCGCG GCCGTGGTGA TGCTGTGCCT GAACCTGTGG
ACCATTCAGG GTCCGACCAT CTACAACGTG TCGGCCGCCG CCTGCCACTT GTTGCGCAGC
GAGCGCCGGC GCACGGCAAC GCTGGTGGCG GCCGGGGTTG GCATTGTGCT GGCGATGGGT
GGCATGTACG AAATGCTGAT CCCGTTCCTG GTGCTGCTGG GGTCGATCAT TCCGCCGGTG
GGTGGGGTGA TCATGGCTGA TTTCTGGTAC CGCCACCGCG GTAAATACCC GGCACTGGGT
ACGGCACACC TGCCACGCTA CAACCTCACC GGGCTGTTTG CCTATGCCGT GGGCGCAGTA
CTGGCCTATG CCTCACCGTG GGTCGCGCCG CTGGTGGGCA TCGCCGCCTC GGCAGTGTGC
TACATCGTCA TTCTAGAGCT GGGCGCACGC CGCCGGGCGC CCGGCCAGGC AGGCGTCGAG
CCATGA
|
|---|
| Protein sequence | MSSPSEFPLS EAPQSARKGL LPIAMVLFSF TFFTGTMFAG GKLGMAFSFV DMLWVATLGN
SLLALYAAVL AFIASRSGLN TVLMGRFCFG EAGSRLSDFL LGFAELGWYA WGTATVAIVL
VKLLGLADGF GMPLMVLFGL GFSITAIIGF KGLDLLSRVS VPLMFVLLLV SMYIATRDAG
GFAGLAAVVP HETMTFSAAV TMVFGTFASG ATQATNWTRL ARNGRVAVIA SVVAFLLGNG
LMVVAGAWCA MVYQQADIVD VMMLQGLSFA AVVMLCLNLW TIQGPTIYNV SAAACHLLRS
ERRRTATLVA AGVGIVLAMG GMYEMLIPFL VLLGSIIPPV GGVIMADFWY RHRGKYPALG
TAHLPRYNLT GLFAYAVGAV LAYASPWVAP LVGIAASAVC YIVILELGAR RRAPGQAGVE
P
|
|---|
| |