| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2519 |
|---|
| Symbol | |
|---|
| ID | 5191703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2865610 |
|---|
| End bp | 2867178 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640586972 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001267838 |
|---|
| Protein GI | 148547736 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.926429 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCGCAG CCCGGAAACA GTATGACGAC GGGGTTTTCG CCATCAGTGG CGAGGGCCGC
GCGGTGGCGC TGTTCCGTCT GGTACTGGCG TTCATGCTGG TGGTGATGCT GGCATTCGTG
CTGGTGGAGG GCTGGCGCAT CTGGCGTGAC TACCGTTTTG CCTATAACAA CGCCGAGAAC
ATGGTCAGCA ACCTGGCTCG GGCCACGGCG CAGCACGCCG AGGACGCTAT CCGCCAGGTC
GACGCCATTA CCGCAGCCTT GGCCGAGCGC CTGGAAGGCG ATGGTTTCGA TCACATCGAC
CGGCCGCGCC TGCATGCCTT GCTGGCGCAG CAAAAAAGCA TCATGCCGCA GTTGCACGGG
CTTTTCGTTT ACGGCCCGGA CGGCAGCTGG ATCGTCACTG ATCAGGCGGC CATCCCGCCC
AACGCCAATA ACGCCGACCG GGACTACTTC GTCTATCACC GCAGCCATAC CGACCCGGGT
GTACGTATCG GTTCGGTGGT GCGCAGCCGC TCCACCGGCG ACCTGATCAT TCCTATTTCC
AGGCGCCTGG AGTATGCCGA CGGCCGCTTC GCCGGCGTAT TGCTCGGCAC CATCAAAGTG
GCGTGGTTCG TGCGTTACTA CGGCGACTTC AAGATTGACG AACGCGGTGC GCTGGTGCTG
GCCAAGCGCG ACGGCACCCT CCTGGTACGG CGCCCGTTCG TGGAACAGGT GATAGGCCGA
AGTCTTGCCA ACAGTGAGAT CTTCCGCAAC CACTTGCCGT ATGCCACAGA AGGGGTAGCG
GAGGCGGTAG CGGTCGTCGA TGGTACACCT CGGCTGTACG GCTACCGCGC GTTGTCCAGC
TACCCGTTGG TCGTGGAGGC GGGGCTGTCG CGTGAATCCA TTGTCGCGCC CTGGCGGTAT
GATGCGATCA AGTCGGTGGC GGTATTGCTG CTGTTGTTGG TAGGACTGGC AGCGTTTGGC
GGAGTGGTAC TGCGTCAACT GCGCGAGCGG ATCGCCATCG AGCGGGCGCT GCTCCAGGCG
CACCAGACGC TGAAAGCGTT GGCCTTGACC GACAGCCTTA CCGGGCTGGG CAACCGTCGG
CGGCTGGATG GGGTGTTCGA ACCTGAGCTG CGCCGTGCAC GGCGCCAAGG CTACCCCCTG
GCGCTGGTGA TGTTAGACCT GGATTACTTC AAGGCCTACA ACGACCGCTA CGGTCACCCG
GCTGGTGACC AGTGCTTGCG ACGCTTTGCC GAAGTGCTGC AGCAGGCCTT GAAACGGCCG
GCCGATCTGG CGGTGCGCTA TGGTGGGGAG GAGTTTACGC TGTTGCTGCC CGATACCGAT
GGCCGCGGGG CGGAAATGCT GGTGCAGGAG TTACAGAAGC TGTTGCGCCG ACAGGCGCTG
GAACATGCCG CAAGCCCATT GGGGAGGGTG TCGTTCAGTG CCGGGATCGC GGTGGTCGAC
CTGGCGCGGG AGGGCGTCAC TGCTGAGGCG CTGGTCGCGG CGGCGGACAG GGCGTTGTAC
CAGGCCAAAC AGCAGGGGCG GGACGGGTAT TGCGTGGCGG GTAGTGTGGC GGCGGGGCAG
GGTTGCTGA
|
|---|
| Protein sequence | MCAARKQYDD GVFAISGEGR AVALFRLVLA FMLVVMLAFV LVEGWRIWRD YRFAYNNAEN
MVSNLARATA QHAEDAIRQV DAITAALAER LEGDGFDHID RPRLHALLAQ QKSIMPQLHG
LFVYGPDGSW IVTDQAAIPP NANNADRDYF VYHRSHTDPG VRIGSVVRSR STGDLIIPIS
RRLEYADGRF AGVLLGTIKV AWFVRYYGDF KIDERGALVL AKRDGTLLVR RPFVEQVIGR
SLANSEIFRN HLPYATEGVA EAVAVVDGTP RLYGYRALSS YPLVVEAGLS RESIVAPWRY
DAIKSVAVLL LLLVGLAAFG GVVLRQLRER IAIERALLQA HQTLKALALT DSLTGLGNRR
RLDGVFEPEL RRARRQGYPL ALVMLDLDYF KAYNDRYGHP AGDQCLRRFA EVLQQALKRP
ADLAVRYGGE EFTLLLPDTD GRGAEMLVQE LQKLLRRQAL EHAASPLGRV SFSAGIAVVD
LAREGVTAEA LVAAADRALY QAKQQGRDGY CVAGSVAAGQ GC
|
|---|
| |