| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2501 |
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| Symbol | ligD |
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| ID | 5193445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2848022 |
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| End bp | 2850523 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640586954 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001267820 |
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| Protein GI | 148547718 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGC CCTTGCAGGA ATATGCGCGC AAGCGCGACT TCAACGCTAC ACCCGAGCCC
AGCGGCGAAC GCAAACGTGG CAAGCGGGCT CATGCGCTGC AGTTCTGCAT CCAGAAACAC
GACGCCAGTC ACCTGCACTA CGACTTCCGC CTCGAGCTCG ACGGCACCCT GAAAAGCTGG
GCGATCCCCA AAGGCCCATC GCTGGACCCC AAGGTGCGCC GCTTGGCAGT GCATGTGGAG
GACCATCCGT TGGACTACGC CGATTTCGAG GGCCATATCC CTGAAGGCCA CTATGGTGCA
GGCGATGTGA TCGTCTGGGA CCGCGGTATC TGGGAGCCTG AAGGCGATGC CCATGAAGCC
TATGTCAAAG GCAAGCTGCG TTTCCGCCTG CAAGGCGAGA AGCTAGCCGG CGTGTGGAAC
CTGTTTCGCA CCCACCTGGC CGGCAAGAAA GAACAATGGA TGCTGGTCAA GTCGCACGAC
GCCCAGGCGC GCAGCGAAAC CGAGTACAGC ATTGTCGAGG CCCTGCCCGA CAGCGTGCTC
AGCGAGCGCA CGCTGGTGCC ACGCAAATCC GCTGCAAAAA AAGCCACTGC CCCGCGCAGC
AGCCGTAAAC GCGCCGACAA AGTTCAGGCT GCCCCCTTGC CAGCACAGCT ACAGCCACAG
CTGGCAACGT TGGTGGATTC TCCACCCAGC GGCGACTGGC GCTACGAAGT CAAGTTCGAT
GGCTACCGTA TCCTGGCCCG AATCGAGGGC CAGGACATCC GCCTGTTCAC CCGCAACGGC
CATGACTGGA GCAGCAAGAT GCCCCGGCAG GTGGCTGCCC TGCGCGCGCT CGGTATCGAC
TCGGCCTGGC TCGATGGCGA AATGGTGGTG GCTGATGAGA ATGGCATGGC TGACTTCCAG
GCGTTGCAGA ACGCCTTCGA TACCGAGCAC GACGAATACA TCACCTATTA TCTGTTCGAC
CTGCCATTTC TGGGCGGTCA GGACCTGCGA CAGCTACCGC TGCAGCACCG CCGCGATACG
TTGCGCCAAC TGCTTGAGCA CAACCATTCG GACGTCATCA AGTATTCCGC CGACTTCGAC
CAACCTGTCG ACTCACTGCT CGACAGTGCC TGCCAGCTGA AGCTGGAAGG CCTTATCGGC
AAGCGAGCTG ACAGTGTCTA CAGCGGCCGC CGTAGCCCAG ACTGGATCAA GCTCAAGTGC
AAGCAACGCC AGGAATTCGT GGTCGTCGGC TACACCGACC CCAAAGGCAG CCGCAGCAGC
TTCGGTGCCC TGCTGCTGGC CCTGCACGAC AATGAGCGTG GCGAGCTGCG CTATGCCGGC
AAGGTCGGTA CCGGCTTCAA CACCACGACA CTGGCCAGCA TCCACACGCG GCTCAAGCCC
TTGGAAATCG CCAGCCCTGC CCTGCCCTCG CCACCTGCCG GAGCCGAAGC GCGTGGTGTG
CACTGGCTGC GGCCGCAGTT GTTGGCTGAA GTCGCCTTTG CCCAGATGAC CCGTGACGGC
ATCGTGCGGC ATTCGGTGTT CCACGGCCTG CGCGATGACA AGGCGGCAAC CGCCATTGAC
CTGGAGCGCG CCATGCCCGC AAAAACTGTA TCCAACCGCA ACAAGCAGGC CAAGGCGTCT
GAGAACCTGG GTGAACTGCG GCTGACCCAC CCCGACCGGG TCATCGACCC CACCACGGGT
GTGACCAAGC GCGAAGTCGC CGAGTATTAC GCTGGCATCA GCCAGTGGAT CCTGCCACAG
CTCAAGCACC GCCCGGTGGC ATTGGTGCGC GCCCCGGACG GCTTGGGTGG CGAGCTGTTC
TTCCAGAAAA ACGCGGGCCA GCTGCACATA CCCAACGTGC TCAGTTATGA AAAGGCCGAG
GCAGGCCAGG CGGCGATGGT CATCAATCGC CCGGACACGC TGCTGGGCGC GGTGCAGATG
AATACGCTGG AACTGCACAC CTGGAACGCC ACGGACAAGG ATTTCGACAA GCCGGACCGT
TTTGTCCTCG ACCTGGACCC TGATCCTGCG CTGCCCTGGA AGGCGATGGT GGAGGCGACC
CAACTGGCCC TCACCCTGCT GGATGAACTG GGCCTGAAGG TGTTCCTGAA AACCAGTGGT
GGCAAGGGTA TTCACGTGGT TGTGCCCTTG ACCCGACGTG CCGGCTGGGA CGAAGTCAAG
GACTTCAGCC ACGCCATCGT CAATTACCTG GCCAAGCTGT TTCCGGAGCG CCTGAGCGCG
GTGTCGGGGC CGAAAAATCG CGTGGGACGC ATCTTCATCG ACTACCTGCG CAATGGCAAG
GGCGCTACCA CGGCGTGCGC CTATTCACTG CGAGCCCGTG ACGGGCTGCC AGTATCGGTA
CCTATCTGGC GTGAGGAACT GGCGCAAATC AAGGCCGCCA ACCAATGGAA CATCACCAAC
CTGCACGAGC GTCTGGCGGA GGTCGACGAC CCTTGGGCCG ACATGGGCAA GGTACGCCAG
TCGATCACCG CGCGCATGCG CAAGCAGCTA GGGCTCGAAT GA
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| Protein sequence | MAKPLQEYAR KRDFNATPEP SGERKRGKRA HALQFCIQKH DASHLHYDFR LELDGTLKSW
AIPKGPSLDP KVRRLAVHVE DHPLDYADFE GHIPEGHYGA GDVIVWDRGI WEPEGDAHEA
YVKGKLRFRL QGEKLAGVWN LFRTHLAGKK EQWMLVKSHD AQARSETEYS IVEALPDSVL
SERTLVPRKS AAKKATAPRS SRKRADKVQA APLPAQLQPQ LATLVDSPPS GDWRYEVKFD
GYRILARIEG QDIRLFTRNG HDWSSKMPRQ VAALRALGID SAWLDGEMVV ADENGMADFQ
ALQNAFDTEH DEYITYYLFD LPFLGGQDLR QLPLQHRRDT LRQLLEHNHS DVIKYSADFD
QPVDSLLDSA CQLKLEGLIG KRADSVYSGR RSPDWIKLKC KQRQEFVVVG YTDPKGSRSS
FGALLLALHD NERGELRYAG KVGTGFNTTT LASIHTRLKP LEIASPALPS PPAGAEARGV
HWLRPQLLAE VAFAQMTRDG IVRHSVFHGL RDDKAATAID LERAMPAKTV SNRNKQAKAS
ENLGELRLTH PDRVIDPTTG VTKREVAEYY AGISQWILPQ LKHRPVALVR APDGLGGELF
FQKNAGQLHI PNVLSYEKAE AGQAAMVINR PDTLLGAVQM NTLELHTWNA TDKDFDKPDR
FVLDLDPDPA LPWKAMVEAT QLALTLLDEL GLKVFLKTSG GKGIHVVVPL TRRAGWDEVK
DFSHAIVNYL AKLFPERLSA VSGPKNRVGR IFIDYLRNGK GATTACAYSL RARDGLPVSV
PIWREELAQI KAANQWNITN LHERLAEVDD PWADMGKVRQ SITARMRKQL GLE
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