Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2488 |
Symbol | |
ID | 5191769 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 2836923 |
End bp | 2838155 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640586941 |
Product | outer membrane porin |
Protein accession | YP_001267807 |
Protein GI | 148547705 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.246443 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.663679 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGCA CACACTTCCT GTCAGCCGCC TGGCTGGCCA CCTTCGCCCT GCCGATGCCC GCGCTGGCCG ACTTCATCGG CGACAGCCAT GCACGCCTGG AGCTGCGCAA CCACTACATC AACCGTGATT TTCGCCAGAG CAACGCCCCG CAGGCCAAGG CCGAGGAATG GGGCCAAGGC TTTACCGCCA AGCTGGAGTC GGGCTTTACC GAGGGCCCGG TCGGCTTTGG CGTGGACGCG CTGGGCCAGT TGGGCATCAA GCTCGACTCC AGCCGCGACC GCCGCAACAC CGGCCTGCTG CCTTTTGGCC CGAACAGCCA CGAACCGGTC GATGACTACA GCGAGCTAGG CCTGACCGGC AAGGTACGCG TGTCCAAGAG CACCTTGCGG CTGGGCACCT TGCAGCCGAT CCTGCCGGTG GTGGTGTACA ACGACACCCG CCTGCTGGCG TCCACCTTCC AGGGTGGCCT GCTCACCAGT CAGGACCTCG ATGGCCTCAC CTTCAATGCC GGACGCCTGA CCAAGGCCAA CCTGCGGGAT TCGTCTGGCC GCGACGACAT CGGCTATGGC GCTGCCAGCA GTGACCACCT GGACTTTGGT GGTGGCAGCT ACGCCATCAC CCCGCAAACC ACGGTCAGCT ATTACTACGC CAAGCTCCAG GACATCTACC GTCAGCAGTT CGTCGGTCTG ATCGACACCC GCCCACTGGC AGAAGGACTG AGCCTGCGCA GTGACCTGCG CTACTTCGAC AGCCGCAACG ACGGTGCCGA GCGTGCCGGC AACATCGACA ACCGTAACTT CAACGCCATG TTCACCCTGG GCGTGCGGGC GCACAAGTTC ACCGCCACCT GGCAGCAGAT GTCCGGTGAC AGCGCCTTCC CGTTCGTCAA CGGCGGCGAC CCGTTCACCG TCAACCTGGT CACCTACAAC ACCTTCACCC GCGCCGGGCT GGACGCTTGG CAAGTGCGCT ACGACTACGA CTTCGTTGCC ATGGGCATCC CCGGCCTGAG CTTCATGACC CGCTACACCG ACGGTCGCCA CGCGGAAACT GCCACCGTGA CCAATGGCCG CGAGCGCGAG CGCGACACCG ACATCACGTA TGTCATCCAG AGTGGCCCGT TCAAGGACGT CAGCCTGCGC TGGCGCAATG TCACCTTCCG CTCCGGCAAC GGCCTGACCA ACGCCGTGGA CGAAAACCGC CTGATCATCG GCTACACCCT GGCGCTGTGG TAA
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Protein sequence | MNRTHFLSAA WLATFALPMP ALADFIGDSH ARLELRNHYI NRDFRQSNAP QAKAEEWGQG FTAKLESGFT EGPVGFGVDA LGQLGIKLDS SRDRRNTGLL PFGPNSHEPV DDYSELGLTG KVRVSKSTLR LGTLQPILPV VVYNDTRLLA STFQGGLLTS QDLDGLTFNA GRLTKANLRD SSGRDDIGYG AASSDHLDFG GGSYAITPQT TVSYYYAKLQ DIYRQQFVGL IDTRPLAEGL SLRSDLRYFD SRNDGAERAG NIDNRNFNAM FTLGVRAHKF TATWQQMSGD SAFPFVNGGD PFTVNLVTYN TFTRAGLDAW QVRYDYDFVA MGIPGLSFMT RYTDGRHAET ATVTNGRERE RDTDITYVIQ SGPFKDVSLR WRNVTFRSGN GLTNAVDENR LIIGYTLALW
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