| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2426 |
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| Symbol | |
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| ID | 5191299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2775611 |
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| End bp | 2777074 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640586882 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001267748 |
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| Protein GI | 148547646 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.335348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.737188 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCCCT ACCGAACTAT TGCTCTGCTG CTGAGTTCCA GCCTCTCTGC AGGGTGCATG
GTTGGCCCGG ATTATAAACA GCCAAACGCA CCGCTGGCCC ATCATTACAT CAGTAGTGCC
GGGCTGGCTG CCACGCCAGG CGCGAGGGCC GACAAACTCG ATAATTGGTG GGATGGGTTT
GGAGATCCGC TGCTGAGCAC ACTCGTGACT GAAGCGATAG GGCAAAATCT TGAGCTTGCC
CAAGCCCAGG CCCGCGTTGT GCAAGCTCGG GCCACCCTCG GTTCCGCTAC CGCAGCACTC
GTGCCTTCGG CGAGCGTGAA TGGCCAAGCA GCTCGTTCAC GTCAATCGAT CGAGACACCG
TTAGGTCAGG TCTTGAATTC AACACCGGGC TACGACCGCT ACGGGAGCAG TTACGAGCTG
AATCTCGATG CAAGCTGGGA AATCGATCTG TTTGGAGGGC TGCGACGCAA TCGTGAGGCA
GCTATGGCGC AGTACCAAGC GTACGAGGCC GGTGCGGTCG CGACGCGTCT TGCCATTGCG
GCCCAGACTG CCGACATCTA TATCACCGTT CGAGGTCTTC AGGCTCGTCT CGCCATTGCT
CAAGCTCAGG CAAGAACACA GAGGGAGCTT TTGGGCAAAG TCAAACTGCT CAATCAAAAG
GGGCTGGCGG CAGACTATGA GGTTCGCCAA ACCGAAGGCG AGCTCTCGCA AGTTGACGCA
ACAATCCCGG GCTTGCGAGC AAACCTTGAT GCTGCACTCA ATGCCTTGGA CGTTGTGCTT
GGCAGCAGTC CAGGCACCCA TCGAACTCAA ATGGCAGCAC CCTCGCACAT TCCAAAGGCC
CCTCAGTTAT CTGACATCGG CGAGCCGGCC CAATTGCTGC GCCGCAGGCC TGATCTGATC
GCTGCCGAGC GAAGAGTCAT GTCTGCAAAC GCGCTTATTG GCAGTGCAAT CAGTGAGTAT
TATCCAACGT TTTCGCTGGG AGCACTCGTT GGCGCTGCTT CGACCTCAGG CGGTCAGTTT
TTCACCGGTG GGGCAAGCCA GTCGGCTGCG TTTCTTGGCT TGCGATGGAG ACTTTTTGAT
TTTGGCCGGA TCAATGCAGA AATCCAGCAG GCGAAAGGGC GTGAGGCTGA AGCTTTGGCC
TATTATCGAC AGGCCGTGCT GGGAGCTTCG CAAGACGTCG AGACCGCATT ATCTGCACTG
GTCAACCGCC AGCAGCAGGC ACAGTCCCTG GGCGAGGGGG AGGCATCCCT TGCGCAAGCG
CGACAATCGT CATTTGCGGC CTACCAGAAA GGCGCTGCAA GTCTATTGAA CGTCCTGAAC
GCTGATCAAC AACTGCTTAG GGCTTCAGAT TCACGAGCGG TCGCGCAAAC AGAGGCGGCC
CGTGCTGCAA TCGCTACGTA TCGCGCATTG GGAGGAGGGT GGTCCCCCTC TTCAATGGCA
GCGACACGAG AAAGAAAAAC TTGA
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| Protein sequence | MLPYRTIALL LSSSLSAGCM VGPDYKQPNA PLAHHYISSA GLAATPGARA DKLDNWWDGF
GDPLLSTLVT EAIGQNLELA QAQARVVQAR ATLGSATAAL VPSASVNGQA ARSRQSIETP
LGQVLNSTPG YDRYGSSYEL NLDASWEIDL FGGLRRNREA AMAQYQAYEA GAVATRLAIA
AQTADIYITV RGLQARLAIA QAQARTQREL LGKVKLLNQK GLAADYEVRQ TEGELSQVDA
TIPGLRANLD AALNALDVVL GSSPGTHRTQ MAAPSHIPKA PQLSDIGEPA QLLRRRPDLI
AAERRVMSAN ALIGSAISEY YPTFSLGALV GAASTSGGQF FTGGASQSAA FLGLRWRLFD
FGRINAEIQQ AKGREAEALA YYRQAVLGAS QDVETALSAL VNRQQQAQSL GEGEASLAQA
RQSSFAAYQK GAASLLNVLN ADQQLLRASD SRAVAQTEAA RAAIATYRAL GGGWSPSSMA
ATRERKT
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