| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2402 |
|---|
| Symbol | |
|---|
| ID | 5194504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 2742705 |
|---|
| End bp | 2744651 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640586859 |
|---|
| Product | feruloyl-CoA synthase |
|---|
| Protein accession | YP_001267725 |
|---|
| Protein GI | 148547623 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCG CCCGTCATTT CGGGCGGCGG CAGGATGTAC AACAAGAACA AGGAGCAACC
TGCGTGAATA ACGAAGCCCG CTCAGGGTCG ACCGACCCTG GCCAACGTCC GCGCTACCGC
CAGGTGGCCA TCGGGCATCC CCAGGTGCAG GTCAGTCACG TCGACGATGT GCTGCGCATG
CAACCTGTCG AGCCACTGGC GCCGCTGCCG GCGCGCCTGC TCGAGCGCCT GGTGCATTGG
GCCCAGGTGC GCCCGGACAC CACTTTCATC GCGGCACGCC AGGCAGACGG TGCCTGGCGT
TCGATCAGCT ACGTGCAGAT GCTCGCCGAT GTGCGCACCA TCGCCGCCAA CTTGCTAGGA
CTGGGCCTCA GTGCCGAGCG CCCGCTGGCG CTGCTTTCCG GCAACGACAT CGAACACCTG
CAAATCGCCC TCGGCGCCAT GTATGCCGGT ATTGCCTATT GCCCGGTGTC GCCGGCCTAC
GCGCTGTTGT CGCAAGACTT CGCCAAGTTG CGCCATGTCT GCGAGGTGCT CACCCCCGGA
GTGGTCTTCG TCAGCGACAG CCAGCCGTTC CAGCGCGCCT TCGAGGCGGT GCTGAACGAT
TCGGTCGGCG TGATCAGCGT GCGTGGCCAG GTCGCAGGTC GCCCCCATAT AAGCTTCGAC
AGCCTGCTAC AACCGGGTGA CCTGGCGGCG GCCGATGCGG CTTTCGCCGC CACCGGGCCG
GACACCATCG CCAAATTCCT CTTCACCTCG GGCTCGACCA AGCTGCCCAA GGCGGTGATC
ACCACCCAGC GCATGCTGTG CGCCAATCAG CAGATGCTTC TGCAGACTTT TCCGACGTTC
GCCGAAGAGC CGCCGGTGCT GGTGGATTGG CTGCCGTGGA ACCACACGTT CGGCGGTAGC
CACAACCTCG GCATCGTGCT TTACAACGGG GGCAGTTTCT ACCTAGACGC CGGCAAGCCG
ACCCCGCAAG GCTTTGCCGA GACCTTGCGC AATCTGCGCG AGATTTCCCC CACGGCCTAC
CTCACCGTAC CCAAGGGCTG GGAGGAACTG GTCAAGGCAC TGGAGCAGGA CCCAGAGCTG
CGCGAGGTGT TCTTTGCCCG CATCAAGCTG TTCTTCTTTG CCGCCGCAGG CCTGTCGCAA
AGCGTCTGGG ACCGGCTGGA CCGCATTGCC GAGCAACACT GTGGCGAACG CATCCGCATG
ATGGCCGGCC TTGGCATGAC CGAAGCTTCA CCATCGTGCA CCTTCACCAC CGGGCCTTTG
TCGATGGCCG GCTATGTCGG GCTGCCGGCA CCTGGCTGCG AAGTGAAGCT GGTGCCGGTG
GGTGACAAGC TCGAGGCGCG CTTCCGTGGC CCGCATATCA TGCCGGGCTA CTGGCGCTCG
CCGCAGCAGA CCGCCGAGGC GTTCGACGAG GAGGGTTTCT ACTGTTCGGG CGACGCGTTG
AAGCTGGCCG ATGCCAGGCA GCCCGAGCTT GGCCTGATGT TCGATGGCCG TATCGCTGAG
GACTTCAAAC TTTCGTCCGG GGTATTCGTC AGTGTCGGGC CGCTGCGCAA CCGCGCAGTG
CTGGAGGGCT CGCCTTACGT ACAGGACATC GTGGTCACCG CGCCGGACCG TGAATGCCTG
GGTCTGCTGG TGTTCCCGCG TCTGCCCGAG TGTCGGCGCC TGGCCGGGCT GGCAGAGGAT
GCCAGCGATG CGCGGGTACT GGCCAACGAC ACCGTGCGCA GTTGGTTCGC TGACTGGCTG
GAGCGATTGA ACCGCGATGC CCAGGGCAAC GCCAGCCGTA TCGAATGGCT GTCGCTGCTG
GCCGAGCCGC CGTCGATCGA CGCCGGTGAA ATCACCGACA AGGGCTCGAT CAATCAGCGC
GCTGTGCTGC AGCGGCGCGC CGCTCAGGTC GAGGCGCTGT ACCGTGGCGA AGACCCCCAC
GCATTGCACG CCAAGGTGCG GCCTTGA
|
|---|
| Protein sequence | MTAARHFGRR QDVQQEQGAT CVNNEARSGS TDPGQRPRYR QVAIGHPQVQ VSHVDDVLRM
QPVEPLAPLP ARLLERLVHW AQVRPDTTFI AARQADGAWR SISYVQMLAD VRTIAANLLG
LGLSAERPLA LLSGNDIEHL QIALGAMYAG IAYCPVSPAY ALLSQDFAKL RHVCEVLTPG
VVFVSDSQPF QRAFEAVLND SVGVISVRGQ VAGRPHISFD SLLQPGDLAA ADAAFAATGP
DTIAKFLFTS GSTKLPKAVI TTQRMLCANQ QMLLQTFPTF AEEPPVLVDW LPWNHTFGGS
HNLGIVLYNG GSFYLDAGKP TPQGFAETLR NLREISPTAY LTVPKGWEEL VKALEQDPEL
REVFFARIKL FFFAAAGLSQ SVWDRLDRIA EQHCGERIRM MAGLGMTEAS PSCTFTTGPL
SMAGYVGLPA PGCEVKLVPV GDKLEARFRG PHIMPGYWRS PQQTAEAFDE EGFYCSGDAL
KLADARQPEL GLMFDGRIAE DFKLSSGVFV SVGPLRNRAV LEGSPYVQDI VVTAPDRECL
GLLVFPRLPE CRRLAGLAED ASDARVLAND TVRSWFADWL ERLNRDAQGN ASRIEWLSLL
AEPPSIDAGE ITDKGSINQR AVLQRRAAQV EALYRGEDPH ALHAKVRP
|
|---|
| |