| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2390 |
|---|
| Symbol | |
|---|
| ID | 5194978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2726361 |
|---|
| End bp | 2727545 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640586847 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001267713 |
|---|
| Protein GI | 148547611 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTCC AGGAACGCCC CCCGCTCCCC AGTAAACACA CCGTCGCCAA GATGGAAGCC
GCCATGGCAC TGGGCAGCTT TGCCATCGGC ACCGGCGAAT TCGCCATCAT GGGCCTGATG
CCCGACATTG CCAGCAATTT GCAGTTGAGC GAGCCGCAGG TGGGCCATGC CATCAGCGCG
TATGCGCTGG GGGTGATGGT TGGCGCACCG ACACTGGCCA TTCTCGGTGC CAAACTGTTG
CGCAAGCACA TGCTGCTGCT GTTGATGCTG CTGTATGCCG TGGGCAACCT GGCCACGGCC
TTTGCCCCCT CGTTCGGTGG CCTGGTCACA TTTCGTTTCA TCAGCGGCCT GCCCCACGGC
GCCTACTTCG GCATTGCCGC AGTGGTCGCC TCGAGCATGG TCGCCAAGGA TCAGCGCGCG
GGGGCGGTTG CCCGGGTAAT GATGGGCCTG ACCTTGGCCA TGTTGCTCGG CAACCCGGTT
GCCACCTTCC TGGGCCAGTA CTTCGGTTGG CGTTCGGCAT TCGTGCTGGT CGGCGCGATC
GCCCTGTGCA CCATCGCCCT GGTCTGGCGT TTCGTGCCCC AGCGCCACGA CGAAACACGC
AGCGACCCGC GCAAGGAGCT ACAAGCCTTT GCCCTCCCAC AGGTATGGAT GGCGCTGGCC
ATCGCTTCGA TCGGTTTTGC CGGCATGTTC TGCGTGTTCA GCTACCTGGC ACCGACCATG
CTGCACGTGA CCCAGGTGTC GCCACAGTGG ATTCCGTTTG GTCTGGCGGC GTTCGGCGTG
GGCGGTATCG TCGGCAACAT CGCTGGCGGC AAGCTGTTCG ACCGCCTGCA GTTCCGCGCC
GTGGGCTTGG TACTGATATG GTCGGTCGCC GTGCTGCTGT TCTTTACCTT CGCCGCCCAG
GCGCTGTGGA GCCTGCTGCT GGGCATCGGC CTGGTGGGCA CCATGATCGC GCTGGCGGCA
CCGCTACAGA TCCGCCTCAT GGACATTGCC CATGAGGCAC CTAGCCTGGC AGCGGCGTCG
AACCATGCGG CGTTCAACCT GGCCAATGCC CTGGGGCCAT GGCTGGGAGG CATGGCGATC
ACTGCCGGCA TGGGCTGGAC CAGCACCGGG TACATCGGCG CCGCGACTGC GCTGGTTGGC
CTGGGCATCT ACCTGGTGGC GCGGCGGATG AAAGGCGGGC ATTGA
|
|---|
| Protein sequence | MSVQERPPLP SKHTVAKMEA AMALGSFAIG TGEFAIMGLM PDIASNLQLS EPQVGHAISA
YALGVMVGAP TLAILGAKLL RKHMLLLLML LYAVGNLATA FAPSFGGLVT FRFISGLPHG
AYFGIAAVVA SSMVAKDQRA GAVARVMMGL TLAMLLGNPV ATFLGQYFGW RSAFVLVGAI
ALCTIALVWR FVPQRHDETR SDPRKELQAF ALPQVWMALA IASIGFAGMF CVFSYLAPTM
LHVTQVSPQW IPFGLAAFGV GGIVGNIAGG KLFDRLQFRA VGLVLIWSVA VLLFFTFAAQ
ALWSLLLGIG LVGTMIALAA PLQIRLMDIA HEAPSLAAAS NHAAFNLANA LGPWLGGMAI
TAGMGWTSTG YIGAATALVG LGIYLVARRM KGGH
|
|---|
| |