| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2337 |
|---|
| Symbol | |
|---|
| ID | 5192154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2667185 |
|---|
| End bp | 2668426 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640586794 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001267660 |
|---|
| Protein GI | 148547558 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAT CACTCAAACC TTTGCGCTTC CCCCTCGCTG CCCTGGCAGT GGTGGTGATC
AGCGCTTGCG GTCGAACCCC CGACGCCGTG CAGGCTCCCG CCGCGCCCAA GGTAAGTGTG
GCCAAGGTGA TCGAACAACC GATCACCGAA TGGGACGAGT TCACCGGCCG CCTCGAAGCC
CCGGAAACCG TCGAAGTGCG CCCGCGGGTC TCCGGCCAGA TCGACCAGGT CGCCTTCACC
GAAGGCGCCC AGGTCAAGAA AGGCGACCTG CTGTTCCAGA TCGACCCGCG CCCGTTCCAG
GCTGAAGTCC GCCGCCTTGA AGCCCAACTG CAACAGGCCA AGGCCACCGC CATCCGCAGC
GCCAACGAAG CCCGCCGTGG TGAACGCCTG CGTGACAGCA ACGCCATCTC CGCCGAACTG
GCCGAATCGC GCAGCAGTGC CGCCGCCGAA GCCCGTGCCG GCGTCGATGC GATCCAGGCC
CAGCTCGACC TGGCACGCCT GAACCTCAGC TTCACCCGCG TCACCGCGCC CATCAGTGGC
CGTGTCAGCC GCGCCGAGTT CACCGCCGGC AACATCGTCA CCGCCGATGT CACCCCGCTG
ACCAGTGTGG TGTCCACCGA CAAGGTCTAC GCCTACTTCG ACGCCGACGA GCGCGTGTAC
CTCAAGTACA CCCAGCTGGC CCGTGAAGGC CAGCGTAGCC AGAGCACCCC GGTATACCTG
GGCCTGACCA ACGAAAGCGG CAACCCGCAC CTGGGCCAGA TGAACTTCGT CGACAACCAG
GTCAACCCGC GCACCGGCAC CATCCGCGGG CGCGCGGTAT TCGACAACAG CAACGGCCAG
TTCACCCCGG GCCTGTATGC GCGCCTGAAG CTGGTCGGCA GCGCCCAGTA CGACGCCATG
CTGATCAACG ACGAAGCTGT GGGCACCGAC CTTGGCAAGA AGTTTGTGCT GGTCATGGAC
AAGGACAACA AAGCCACCTA TCGCGCCGTG GAACTGGGGC CAAAGCTGGA AGGCTTGCGC
ATCGTGCGCA GCGGCCTGGG CAAGGACGAC CGCATCGTGG TCAAGGGCCT GCAGCGCGTG
CGCCCTGGTT CGCCGGTAAC CCCGGAAGAA ACACAGATGG CCAGCGAACA AACCCTCGCC
GCCCTCGCCC AGCAGCGTCA GGCCCTGGAG GCCAGCAACC CGGCGCCGAA GGTGGCGGGC
AACAACGTGA AAGTCGCCAG CGCCCAGGCG CCACGCGGTT AA
|
|---|
| Protein sequence | MEQSLKPLRF PLAALAVVVI SACGRTPDAV QAPAAPKVSV AKVIEQPITE WDEFTGRLEA
PETVEVRPRV SGQIDQVAFT EGAQVKKGDL LFQIDPRPFQ AEVRRLEAQL QQAKATAIRS
ANEARRGERL RDSNAISAEL AESRSSAAAE ARAGVDAIQA QLDLARLNLS FTRVTAPISG
RVSRAEFTAG NIVTADVTPL TSVVSTDKVY AYFDADERVY LKYTQLAREG QRSQSTPVYL
GLTNESGNPH LGQMNFVDNQ VNPRTGTIRG RAVFDNSNGQ FTPGLYARLK LVGSAQYDAM
LINDEAVGTD LGKKFVLVMD KDNKATYRAV ELGPKLEGLR IVRSGLGKDD RIVVKGLQRV
RPGSPVTPEE TQMASEQTLA ALAQQRQALE ASNPAPKVAG NNVKVASAQA PRG
|
|---|
| |