Gene Pput_2334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2334 
Symbol 
ID5190300 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2661301 
End bp2662500 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content66% 
IMG OID640586791 
ProductTPR repeat-containing protein 
Protein accessionYP_001267657 
Protein GI148547555 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.752324 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGCCA TCGTATTCAC CCCAATACGC AGTGCATGGA ATGCCACCGC AGGCCTGGCG 
ACTGGCCAAC GGCGTGCCCG GTTCGGTTGC ATTTACCCCC CGGCTGGCCC AAGCTCTGCC
CTTCCCGCCG CCACGGATCG TCCGATGCCC AGACGCAACC GCTACCTGAT CGCCCTGCTG
TTGTCGATTC TGGTATCGGC CCTGTTCGGC TACCTGTGGC ACGACGCCCC GCCAACCCCG
CCGACCTTGC CAGCACACAG CTACGCCAAG GCGCTGCGCC AGGCCCACGA CGGCCAGCCC
GGTGCCGCAC GGGTGCTGTA CCAGCAATTG CAACGAACCG ACCTGCCTGC GATCCGCCGT
GCGGCGCTGT ACGCCGAGTT GCCCAACTAC CCCTCGCCGC AGGCATTGAA ACTGGCCCGC
CAGGACCTGG AACATGCCGA GCCGCTGGTG CGTCGAGCGG CCATTGCCAG TATCCGTCGC
CTGTTACCGC CAGCACAGCG CAGCCTGGTA CTCGGCCCGC TGCTGGACGA CCGTGAGCAA
AGCGTGCGTT TTGCCGCCGT GGATGCCCTG CTGGGCCTCG ATCCCGACGC CATCGGCCTC
TATTTCGGCC CCCTGCAGTC AGCCCTGGAG CAATACCAGC AAGCCCTCGA GCAACAGCCT
GAAGATGCCG ACGCCCAAGT ACACCTGGCG CGCCTGTACC TGCACGAAAA CGACTACACG
CACGCTGCTG TGGCCTTGCA ACGTGCGCTC GCGGTTGCCC CCGACAACCT CGATGCCCTG
GCGACTCAGG TACGCCTGCT TGAGCGCCAG GGCCACCACG ACGCCTCCCG CCAGGTGCTG
GGCAAAGCCC TGGCGCTGAG CCCCGACTCG GCCTTTCTGC AGTATGAGCT TGGGCTTTGG
CTGAAGCGCC ACGAACAGCG CGAGTACGCC TTGCTGGCCC TGTCCCGCGC CGTCGAACTG
GACCCGGACA ACGCCGATTA CCGTTATACC CTGGCGGTCA CCCTGCATGA GCTGGACCAG
CTCGACGCCG CCCAGAAGCA ACTGGAAACC GTGCTCAATC GCCAGCCAGC CAATCGCCGG
GCGCGGGTGC TGCTGATCCA GTACTGGAAA GAGTCCGGCC AACTGCAGAA CGTGCAAGTT
TCGCTAGCCG AGCTGGAGCG CCAGAACCCG GACGACCCTG CGCTGCAACA GGGCCTGTAG
 
Protein sequence
MFAIVFTPIR SAWNATAGLA TGQRRARFGC IYPPAGPSSA LPAATDRPMP RRNRYLIALL 
LSILVSALFG YLWHDAPPTP PTLPAHSYAK ALRQAHDGQP GAARVLYQQL QRTDLPAIRR
AALYAELPNY PSPQALKLAR QDLEHAEPLV RRAAIASIRR LLPPAQRSLV LGPLLDDREQ
SVRFAAVDAL LGLDPDAIGL YFGPLQSALE QYQQALEQQP EDADAQVHLA RLYLHENDYT
HAAVALQRAL AVAPDNLDAL ATQVRLLERQ GHHDASRQVL GKALALSPDS AFLQYELGLW
LKRHEQREYA LLALSRAVEL DPDNADYRYT LAVTLHELDQ LDAAQKQLET VLNRQPANRR
ARVLLIQYWK ESGQLQNVQV SLAELERQNP DDPALQQGL