Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2334 |
Symbol | |
ID | 5190300 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 2661301 |
End bp | 2662500 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640586791 |
Product | TPR repeat-containing protein |
Protein accession | YP_001267657 |
Protein GI | 148547555 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.752324 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGCCA TCGTATTCAC CCCAATACGC AGTGCATGGA ATGCCACCGC AGGCCTGGCG ACTGGCCAAC GGCGTGCCCG GTTCGGTTGC ATTTACCCCC CGGCTGGCCC AAGCTCTGCC CTTCCCGCCG CCACGGATCG TCCGATGCCC AGACGCAACC GCTACCTGAT CGCCCTGCTG TTGTCGATTC TGGTATCGGC CCTGTTCGGC TACCTGTGGC ACGACGCCCC GCCAACCCCG CCGACCTTGC CAGCACACAG CTACGCCAAG GCGCTGCGCC AGGCCCACGA CGGCCAGCCC GGTGCCGCAC GGGTGCTGTA CCAGCAATTG CAACGAACCG ACCTGCCTGC GATCCGCCGT GCGGCGCTGT ACGCCGAGTT GCCCAACTAC CCCTCGCCGC AGGCATTGAA ACTGGCCCGC CAGGACCTGG AACATGCCGA GCCGCTGGTG CGTCGAGCGG CCATTGCCAG TATCCGTCGC CTGTTACCGC CAGCACAGCG CAGCCTGGTA CTCGGCCCGC TGCTGGACGA CCGTGAGCAA AGCGTGCGTT TTGCCGCCGT GGATGCCCTG CTGGGCCTCG ATCCCGACGC CATCGGCCTC TATTTCGGCC CCCTGCAGTC AGCCCTGGAG CAATACCAGC AAGCCCTCGA GCAACAGCCT GAAGATGCCG ACGCCCAAGT ACACCTGGCG CGCCTGTACC TGCACGAAAA CGACTACACG CACGCTGCTG TGGCCTTGCA ACGTGCGCTC GCGGTTGCCC CCGACAACCT CGATGCCCTG GCGACTCAGG TACGCCTGCT TGAGCGCCAG GGCCACCACG ACGCCTCCCG CCAGGTGCTG GGCAAAGCCC TGGCGCTGAG CCCCGACTCG GCCTTTCTGC AGTATGAGCT TGGGCTTTGG CTGAAGCGCC ACGAACAGCG CGAGTACGCC TTGCTGGCCC TGTCCCGCGC CGTCGAACTG GACCCGGACA ACGCCGATTA CCGTTATACC CTGGCGGTCA CCCTGCATGA GCTGGACCAG CTCGACGCCG CCCAGAAGCA ACTGGAAACC GTGCTCAATC GCCAGCCAGC CAATCGCCGG GCGCGGGTGC TGCTGATCCA GTACTGGAAA GAGTCCGGCC AACTGCAGAA CGTGCAAGTT TCGCTAGCCG AGCTGGAGCG CCAGAACCCG GACGACCCTG CGCTGCAACA GGGCCTGTAG
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Protein sequence | MFAIVFTPIR SAWNATAGLA TGQRRARFGC IYPPAGPSSA LPAATDRPMP RRNRYLIALL LSILVSALFG YLWHDAPPTP PTLPAHSYAK ALRQAHDGQP GAARVLYQQL QRTDLPAIRR AALYAELPNY PSPQALKLAR QDLEHAEPLV RRAAIASIRR LLPPAQRSLV LGPLLDDREQ SVRFAAVDAL LGLDPDAIGL YFGPLQSALE QYQQALEQQP EDADAQVHLA RLYLHENDYT HAAVALQRAL AVAPDNLDAL ATQVRLLERQ GHHDASRQVL GKALALSPDS AFLQYELGLW LKRHEQREYA LLALSRAVEL DPDNADYRYT LAVTLHELDQ LDAAQKQLET VLNRQPANRR ARVLLIQYWK ESGQLQNVQV SLAELERQNP DDPALQQGL
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