Gene Pput_2314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2314 
Symbol 
ID5191562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2636184 
End bp2637359 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content69% 
IMG OID640586771 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001267637 
Protein GI148547535 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTACTA CCCTCTCCCC GTGCCTGCGC CCGTTGGCGC TCATGGCATT GCTGAGCCTG 
TCCCTGGCCG GCTGCAGCGA CAGCGCCGAG CCAGACGACC AGGCCCCCAC TGCGCAAGTG
CGCGTGGAAA CCCTGCAACT GCAGCCACTG GCCATCAGCA GCGAACTCAG CGGCCGTATC
CTCGCGCCAC GCACCGCCGA AGTGCGTGCG CGGGTCGCAG GCGTGGTGCT CAAGCGGGTG
TACCGCGAAG GCAGCGACGT CAAGCAGGGT GATGTACTGT TCCTGATCGA CCCGGCACCG
TTCAAGGCCG ACCACGATAG CGCCCGCGCC ACGCTGGCCA AGGCCGAGAC CACCCGGTAC
CAGGCGCGCC TGCAAGAGCA GCGCTACCGC GAGCTGGTCG ACGACAAAGC CGTCAGCCGC
CAGGAATACG ACAACGCCAA GGCCAGTTTC CTGCAGGCCG ATGCCGAAGT GGCCGAAGCC
AGGGCGGCGC TGGAGCGCGC CCGGCTGAAC CTCGGCTATG CCACCGTGAC CGCGCCGATC
TCCGGCCGTA TCGGCCGCGC CCAGGTCACC GAAGGCGCGC TGGTCGGGCA AAACGAAACC
ACCCCGCTGG CGACCATCCA GCAACTGGAC CCGATCCATG CCGATGTCAC CCAGTCTACC
CGTGAGCTCA ACGCGCTGCG CCGCGCCCTG CGCGCTGGCG AATTGCAGCA GGTGGGCGAC
GGCCAGGCAC GCGCCACGCT GATCCAGGAT GACGGCAGCG CCTACCCGCT GCCGGGCAAG
CTGCTGTTCT CCGACATCAG TGTCGATCCC AGCACCAACC AGATCACCCT GCGCAGCGAG
TTCCCCAACC CGGACCTCGA CCTGCTGCCT GGCAGCTACG TGCGGGTACG CCTGGAGCAA
GCGGTGCAAC CCAAGGGCCT GAGCGTGCCG CAACGCGCCA TCCTGCGTGA CAGCGCCGGT
GTGCCGAAGG TGCTGGTGGT AGACCAGCAC GCCCGGGTCA GCGACCGCCA GGTTGTACTG
GGCAGCGCCC AAGGCGACCG CTGGGTCGTC AGCGAGGGCC TGGCGGCCGG CGAACGGGTG
GTGGTCGAAG GCCTGCAGCA CGTCAAGGCC GGTGACCAGG TGCAGGTCGA CAACGCACCC
GCTGCCCCGC CCATCGCACA GCATACCGGC CAGTGA
 
Protein sequence
MPTTLSPCLR PLALMALLSL SLAGCSDSAE PDDQAPTAQV RVETLQLQPL AISSELSGRI 
LAPRTAEVRA RVAGVVLKRV YREGSDVKQG DVLFLIDPAP FKADHDSARA TLAKAETTRY
QARLQEQRYR ELVDDKAVSR QEYDNAKASF LQADAEVAEA RAALERARLN LGYATVTAPI
SGRIGRAQVT EGALVGQNET TPLATIQQLD PIHADVTQST RELNALRRAL RAGELQQVGD
GQARATLIQD DGSAYPLPGK LLFSDISVDP STNQITLRSE FPNPDLDLLP GSYVRVRLEQ
AVQPKGLSVP QRAILRDSAG VPKVLVVDQH ARVSDRQVVL GSAQGDRWVV SEGLAAGERV
VVEGLQHVKA GDQVQVDNAP AAPPIAQHTG Q