| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2313 |
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| Symbol | |
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| ID | 5193487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2633044 |
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| End bp | 2636172 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640586770 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001267636 |
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| Protein GI | 148547534 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCAAT TCTTCATCGA TCGCCCGGTA TTCGCCTGGG TGGTCGCACT GTTCATCCTG
CTGGCCGGCG CGCTGGCCAT CCCGCAGCTG CCGGTCGCCC AGTACCCCAA CGTGGCACCG
CCGCAGGTGG AAATCTACGC CGTGTACCCA GGCGCCTCGG CGGCGACCAT GGACGAAAGC
GTGGTCAGCC TGATCGAGCA AGAGCTCAAT GGCGCCGACA ACTTGTTGTA CTTCGAATCG
CAGAGCAGCC TGGGCAGCGC CACCATCACC GCCACCTTCG CCCCGGGCAC CCACCCGGAC
CTGGCCCAGG TCGACGTGCA GAACCGCCTG AAGGTGGTCG AGTCGCGCCT GCCACGCCCG
GTCACCCAGC AAGGCCTGCA GGTGGAGAAA GTGTCCACCG GCTTCCTGCT GTTGGCCACC
CTCACCTCCG AAGACGGCAA ACTCGATGAA ACCGCGCTGT CGGACATCCT GGCACGTAAC
GTGATGGACG AAATCCGCCG CCTCAAGGGC GTCGGCAAGG CCCAGTTGTA TGGCTCCGAA
CGCGCCATGC GCATCTGGAT CGACCCGCGC AAGCTGATTG GCTTCAACCT CACACCCAAC
GATGTGGCCG AAGCCATCGC CGCGCAGAAC GCCCAGGTGG CCCCTGGCAG CATCGGCGAT
CTGCCCAGCC GCAGCACCCA GGAAATCACC GCCAACGTGG TGGTCAAAGG CCAGTTGAGC
AGCCCCGAAG CGTTTGCTGC CATTGTCCTG CGTGCCAACC CGGACGGCTC CACGGTCACC
ATCGGGGATG TCGCCCGGGT TGAAATCGGC GCCCAGGAAT ACCAGTACGG CACGCGCCTG
AACGGCAAAC CGGCCACGGC CTTCAGCGTG CAGTTGTCAC CCGGCGCCAA CGCCATGGAA
ACCGCTACCC TGGTACGGGC GAAGATGCAG GACCTGGCGC GCTACTTCCC GGAAGGCGTC
AAGTACGACA TCCCCTACGA CACCTCGCCG TTCGTCAAGG TGTCGATCGA GCAGGTCATC
AACACCCTGT TCGAAGCCAT GCTGCTGGTG TTCGCAGTCA TGTTCCTGTT CCTGCAGAAC
CTGCGCTACA CACTGATCCC GACCCTGGTC GTGCCAGTGG CATTGATGGG CACCTTCGCC
GTGATGCTGG CCATGGGCTT CTCGGTCAAT GTGCTGACAC TGTTCGGCAT GGTACTGGCC
ATCGGCATTC TGGTCGACGA TGCCATTGTG GTGGTGGAGA ACGTCGAACG CATCATGGCC
GAAGAAGGCT TGCCGCCCAA GGACGCCACA CGCAAGGCCA TGGGCCAGAT CAGCGGTGCA
ATCGTTGGCA TCACGCTGGT GCTGGTGGCG GTATTCCTGC CCATGGCCTT CATGCAAGGC
TCGGTGGGGG TGATCTACCA GCAGTTCTCG CTGTCGATGG CGGTGTCGAT CCTGTTCTCG
GCGTTTCTCG CCCTCAGCCT GACCCCGGCA TTGTGCGCCA CCTTGCTCAA ACCCGTGGCC
AAGGGCGAGC ACCATGAACG CAAAGGCTTC TTCGGCTGGT TCAATCGCCG CTTCGAACGC
ATGAGCAACG GCTACCAGCG CTGGGTGGTG CAGGCGCTCA AGCGCAGCGG CCGCTACCTG
CTGGTGTACG CGGTGCTGCT GGCGGTGCTG GGCTACGGTT TCAGCCAGCT GCCTACGGCG
TTCCTGCCCA CCGAAGACCA AGGCTACACC ATTACCGACA TTCAACTGCC GCCGGGCGCC
AGCCGCATGC GCACCGAACA GGTAGCCGCG CAGATCGAGG CGCACAACGC CGAAGAACCG
GGCGTGGGCA ACACCACCTT GATCCTCGGC TTCAGCTTCT CCGGTAGCGG GCAGAACGCG
GCGCTGGCCT TCACCACCCT CAAGGACTGG TCCGAGCGCG GCGCCGACGA CAGCGCCCAG
TCGATCGCCG ACCGCGCGAC CATGGCCTTC ACCCAGCTCA AGGACGCGAT AGCCTATTCG
GTGCTGCCGC CCCCCATCGA CGGCCTCGGT GAGTCGACCG GTTTCGAATT TCGCCTTCAG
GACCGTGGCG GCATGGGCCA CGCCGAGCTG ATGGCAGCCC GTGACCAGTT GCTCGAAAGC
GCCAGCAAAA GCAAGGTGCT GACCAACGTG CGCGAAGCCT CGCTGGCGGA AAGCCCGCAG
GTGCAACTGG AAATCGACCG CCGTCAGGCT AATGCACTGG GCGTGTCGTT TGCCGATATC
GGCACGGTGC TGGACGTGGC AGTGGGCTCC AGCTACGTCA ACGATTTCCC CAACCAGGGC
CGTATGCAGC GGGTGGTGGT GCAGGCCGAA GGTGACCAGC GCAGCCAGGT CGAAGACTTG
CTGAACATTC ACGTGCGCAA CGACAGCGGC AAGATGGTGC CACTGGGTGC GTTCGTTCAG
GCCAGGTGGG TCAGCGGCCC GGTGCAACTG ACCCGCTACA ACGGTTACCC GGCGGTGTCG
ATCTCTGGCG AGCCAGCCGC CGGCTACAGC TCGGGCGAAG CCATGGCCGA AGTCGAGCGG
CTGGTGGCGC AGCTACCGGC CGGTACCGGC CTGGAATGGA CCGGCCTGTC ATTGCAGGAG
CGGCTGTCCG GTAGCCAGGC CCCGCTGCTG ATGGCGCTGT CGCTGCTGGT GGTGTTCCTG
TGCCTGGCTG CGCTGTACGA AAGCTGGTCG ATCCCGACTG CGGTGCTGCT GGTCGTTCCG
CTCGGCGTGC TCGGTGCGGT GCTGGCGGTG ACCTTGCGCG GTATGCCCAA CGACGTTTTC
TTCAAGGTTG GCCTGATCAC GCTGATTGGC CTGTCGGCGA AGAACGCCAT CCTGATCATC
GAGTTTGCCA AACATCTGGT AGACCAGGGC GTGGACGCCG TCGACGCCGC CGTGCAAGCG
GCTCGCCTGC GCCTGCGGCC GATCGTGATG ACTTCGCTGG CGTTCATCCT CGGCGTGGTG
CCCCTGGCCA TCGCCAGCGG CGCAAGCTCT GCCAGCCAGC AAGCGATTGG CACCGGGGTG
ATCGGCGGCA TGCTCAGCGC CACGCTGGCA GTGGTGTTCG TGCCGGTGTT CTTCGTGGTG
GTGATGCGCC TGTCCCGGCG ACGCCAGGCG CATGACAGCG ACGGGCAACC CGTGCCCCGC
GAAAGCTGA
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| Protein sequence | MPQFFIDRPV FAWVVALFIL LAGALAIPQL PVAQYPNVAP PQVEIYAVYP GASAATMDES
VVSLIEQELN GADNLLYFES QSSLGSATIT ATFAPGTHPD LAQVDVQNRL KVVESRLPRP
VTQQGLQVEK VSTGFLLLAT LTSEDGKLDE TALSDILARN VMDEIRRLKG VGKAQLYGSE
RAMRIWIDPR KLIGFNLTPN DVAEAIAAQN AQVAPGSIGD LPSRSTQEIT ANVVVKGQLS
SPEAFAAIVL RANPDGSTVT IGDVARVEIG AQEYQYGTRL NGKPATAFSV QLSPGANAME
TATLVRAKMQ DLARYFPEGV KYDIPYDTSP FVKVSIEQVI NTLFEAMLLV FAVMFLFLQN
LRYTLIPTLV VPVALMGTFA VMLAMGFSVN VLTLFGMVLA IGILVDDAIV VVENVERIMA
EEGLPPKDAT RKAMGQISGA IVGITLVLVA VFLPMAFMQG SVGVIYQQFS LSMAVSILFS
AFLALSLTPA LCATLLKPVA KGEHHERKGF FGWFNRRFER MSNGYQRWVV QALKRSGRYL
LVYAVLLAVL GYGFSQLPTA FLPTEDQGYT ITDIQLPPGA SRMRTEQVAA QIEAHNAEEP
GVGNTTLILG FSFSGSGQNA ALAFTTLKDW SERGADDSAQ SIADRATMAF TQLKDAIAYS
VLPPPIDGLG ESTGFEFRLQ DRGGMGHAEL MAARDQLLES ASKSKVLTNV REASLAESPQ
VQLEIDRRQA NALGVSFADI GTVLDVAVGS SYVNDFPNQG RMQRVVVQAE GDQRSQVEDL
LNIHVRNDSG KMVPLGAFVQ ARWVSGPVQL TRYNGYPAVS ISGEPAAGYS SGEAMAEVER
LVAQLPAGTG LEWTGLSLQE RLSGSQAPLL MALSLLVVFL CLAALYESWS IPTAVLLVVP
LGVLGAVLAV TLRGMPNDVF FKVGLITLIG LSAKNAILII EFAKHLVDQG VDAVDAAVQA
ARLRLRPIVM TSLAFILGVV PLAIASGASS ASQQAIGTGV IGGMLSATLA VVFVPVFFVV
VMRLSRRRQA HDSDGQPVPR ES
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