| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2311 |
|---|
| Symbol | |
|---|
| ID | 5191005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 2630599 |
|---|
| End bp | 2632272 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640586768 |
|---|
| Product | acyl-CoA synthetase |
|---|
| Protein accession | YP_001267634 |
|---|
| Protein GI | 148547532 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.462118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCAGC CAAGCTACAC CCAGGGCAAC CAGGACAAGC CCCTGCTGAC CCAATGCATC
GGCGACGCCT TCGACGCCAC CGTGGCCCGC TTCCCCGAGC GTGAGGCGCT GGTGGTTCAC
CATCAGGCCC TGCGCTACAC GTGGCGGCAA CTGGCCGACG CCGTCGACCA GCACGCCCGC
GCGCTGATGG CCCTGGGCGT GCAGCCCGGT GACCGTCTTG GCATCTGGGC ACCCAACTGC
GCCGAGTGGT GCATTACCCA GTTTGCCAGC GCCAAGGTTG GCGCGATCCT GGTCAACATC
AACCCGGCCT ACCGTTCCAG CGAACTGGAC TACGCCCTTG GCCAGTCCGG CTGCCGCTGG
GTGATCTGTG CCGATGCGTT CAAGACCTCC GATTACCACG CCACGCTGCA GGGCCTGCTC
CCGGGCCTGG CCAACGGCCA ACCGGGCGCG CTGATCTGCG AGCGCTTCCC CGAGCTGCGT
GGCGTGGTCA GCCTGGCGCT GTCGCCACCG CCGGGCTTCC TGGCTTGGCA CGCATTGCAG
GCCCGTGCCG AGGTTGTCAG CGGCGAGGCC CTGGCTGCGC GCCAGGCACA ACTGCGTTGC
GACGATCCGA TCAACATCCA GTACACCTCA GGCACCACCG GTTTCCCCAA GGGGGCCACC
CTTAGCCACA GCAATATCCT CAACAACGGG TACATGGTCG GTGAAAGCCT GGGCCTTACC
GAGCACGATC GGCTGGTGGT GCCGGTGCCG CTGTACCACT GCTTCGGCAT GGTCATGGCC
AACCTTGGCT GCATGACACA CGGCAGCGCA CTGATTTACC CCAGCGATGC CTTCGACCCG
CTGGCCACGC TGCGGGCAGT GGCGCAGGAA AAAGCCACTG CGCTGTATGG CGTGCCGACC
ATGTTCATTG CCGAACTGGA CCATCCGCAG CGTGGAGAGT TCGACCTGTC GAGCCTGCGC
ACCGGGATCA TGGCCGGCGC GACCTGCCCG ATCGAGGTGA TGCGCCGCGT GATTGGCGAG
ATGCACATGG CCGAAGTGCA GATTGCCTAT GGCATGACCG AGACCAGCCC GGTGTCCTTG
CAGACCGGTG CCGCTGACGA CCTGGAGCGT CGCGTGACCA GCGTCGGTCG CACCCAGCCC
CGGCTGGAGA GCAAGGTGGT GGACGCCGAA GGCAACACTG TCCCGCGTGG CGAGATCGGC
GAACTGTGCA CCCGCGGCTA CAGCGTGATG CTGGGTTACT GGAACAACCC CAAAGCCACC
GCCGAGAGCA TCGACGCAGA GGGCTGGATG CACACTGGCG ACCTGGCGGT GATGGACGAG
CAGGGCTATG TGCGTATTGT CGGACGTAGC AAGGACATGA TCATTCGCGG CGGCGAGAAC
ATTTATCCGC GCGAGCTGGA GGAGTTCTTC TTCACCCATC CGGCGGTGGC CGATGTGCAG
GTGATTGGCG TGCCGTGCAG CAAGTACGGT GAAGAGATCG TGGCCTGGGT GCGGCTGCAT
CCGGGGCATG CTGTCAGTGA GGACGCGTTG CGTGAGTGGG CGAGGGCGAG GATTGCGCAC
TTCAAGGTGC CCAGGTACTT CCGTTTTGTC GACGCGTTTC CGATGACGGT TACGGGCAAG
GTGCAGAAGT TCCGGATGCG CGAGATCAGT ATCGAAGAGC TGTCTGCCAG ATGA
|
|---|
| Protein sequence | MPQPSYTQGN QDKPLLTQCI GDAFDATVAR FPEREALVVH HQALRYTWRQ LADAVDQHAR
ALMALGVQPG DRLGIWAPNC AEWCITQFAS AKVGAILVNI NPAYRSSELD YALGQSGCRW
VICADAFKTS DYHATLQGLL PGLANGQPGA LICERFPELR GVVSLALSPP PGFLAWHALQ
ARAEVVSGEA LAARQAQLRC DDPINIQYTS GTTGFPKGAT LSHSNILNNG YMVGESLGLT
EHDRLVVPVP LYHCFGMVMA NLGCMTHGSA LIYPSDAFDP LATLRAVAQE KATALYGVPT
MFIAELDHPQ RGEFDLSSLR TGIMAGATCP IEVMRRVIGE MHMAEVQIAY GMTETSPVSL
QTGAADDLER RVTSVGRTQP RLESKVVDAE GNTVPRGEIG ELCTRGYSVM LGYWNNPKAT
AESIDAEGWM HTGDLAVMDE QGYVRIVGRS KDMIIRGGEN IYPRELEEFF FTHPAVADVQ
VIGVPCSKYG EEIVAWVRLH PGHAVSEDAL REWARARIAH FKVPRYFRFV DAFPMTVTGK
VQKFRMREIS IEELSAR
|
|---|
| |