| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2293 |
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| Symbol | |
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| ID | 5195100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2611208 |
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| End bp | 2613073 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640586750 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001267616 |
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| Protein GI | 148547514 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.932026 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCGT CAAAGCTGTG CAAGCCTGCT CCGTTTCTGC TCGTGGCGCT GTGCGTGGCC
ATTGCCGGTT GCGGCTCCAG TGCGGTTCGC CAGGACAGCG ACCAGTTGAT GAAAGAGGGC
CAGTACGAGG CCGGCATCGC CCGCCTGGAA GAGGCCCTGC GCGACGACCC GCGTGACACA
GAGCTGAATA TCGCCCTGGC CCACAGCCGC CAGGCGGCAG TCGAGGCCCT GATTAGCCAG
GCCGACAGCG ACCGCGTCCG CCATGACTTC GCCAATGCCC GCATGGGCTA TGGCCGGGTG
CTCACCCTGG AGCCGAACAA CCGCCGCGCC CAGGATGGCA TTCGCCAGCT GGAGCTGATC
CGCACCCTGG ACGATCGCGT AGCGCTTGGC CAGGCGGCGC TGCGCCAGGG CGACCTGTTC
GGTGCCGAAC GTTACATGCG CGAAGTCTTG CGTCTGGACC CGCAGAACCA GAAGGGCATA
ACCCTGCGCA GCGACATCGA AAACGTGCAG GCACGCACCG CGCAGCCGTA CCCGCAATTG
CGCAGCAAGC TCGAGCGGCC GGTCACCCTG GAGTTTCGCG ATGCCAACCT GAAGACCATC
TTCGAAGTGC TGTCGCAGGT GGCCGGCATC AACTTCATCT TCGACAAGGA CCTGCGCCCG
GACATGAAAG CCACCATCTT CGTGCGCGAG GTGCGCATCG AGGACGCGAT AGCGCTGCTG
CTGGAACAAA ACCAGCTGCG CCAGAAGATC GTCAACGACA ACACCGTCAT GGTCTACCCC
GATTCGCCGC AGAAGACCAA GGACTACCAG GAACTGGTCA TGCGTACGTT CTACCTGACC
AGCATCGACG CCAATACCGC GTTGAACATG GTCAAGACCA TGCTCAAGAC CCGCGACGTG
TTCGTTGACG AGCGCCTCAA CACCCTGACC ATGCGCGACA CGTCGGACGC GGTGCGCATG
GCCGAGAAGC TGCTGCAGTC GCAGGACCAG TCCAACCCCG AGGTGGTGCT GGAAGTGGAG
GTGATGGAGG TGGCCACCTC GCGCATCCTC GACCTTGGCC TGCAATGGCC GAACACCTTC
GGCGTGCTGA GCGACGATGG CAACCCGGTC AGCGTGCTCG ACCAGCTCAA GGGCATCAGT
TCCAGCCGCA TCAGCATTGC GCCGGCGCCG CAGGCCAAGA TCAACGCCCA GGACAAGGAC
ATCAACACCC TGGCCAGCCC GGTGATCCGC GTCAGCAACC GCGAGCAAGC GCGCATCCAC
ATCGGCCAGC GGGTACCGAT CATCAGCGCC ACCTCGGTGC CATCGACCCA AGGGCCGGTC
ATTACCGAGA GCGTCACCTA CCTGGACGTC GGCCTGAAGC TTGAAGTGCA GCCCACCGTG
CACCTGAACA ACGAAGTGGC GATCAAGGTG GCGCTCGAGG TCAGCAACGC CACCCCGCTG
GAGGCCACCC GCCAGGGCAC CATCCCGGTC CAGGTCGACA CCCGCAACGC GCAGACCAGC
CTGCGCCTGC ATGACGGCGA AACCCAGGTG CTGGCCGGCC TGGTGCGCAA CGACCACAAC
GCCAGTGGCA ACAAGATTCC CGGCCTTGGC GATATCCCGG GCCTGGGCCG GCTGTTCGGC
AGCAACAAGG ACGACATGAG CAAGAGTGAG CTGGTGCTGG CGATCACCCC GCGCATCGTA
CGTAACCTGC CGTACCAGAG CCCGTCGGAC ATGGAGTTTT CCACGGGCAC CGAGTCGGCC
ATGCAGGTGC GCCAGATGGC GCCACTGCCG CCGATGGACG TACCCGGTAA TGCGCCGACC
ACCGATGAAC CGGTCGTGGA CAGCCAGATG GCGGTCGCCC CGGTCAACGG GAGCCCACGG
CCATGA
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| Protein sequence | MKSSKLCKPA PFLLVALCVA IAGCGSSAVR QDSDQLMKEG QYEAGIARLE EALRDDPRDT
ELNIALAHSR QAAVEALISQ ADSDRVRHDF ANARMGYGRV LTLEPNNRRA QDGIRQLELI
RTLDDRVALG QAALRQGDLF GAERYMREVL RLDPQNQKGI TLRSDIENVQ ARTAQPYPQL
RSKLERPVTL EFRDANLKTI FEVLSQVAGI NFIFDKDLRP DMKATIFVRE VRIEDAIALL
LEQNQLRQKI VNDNTVMVYP DSPQKTKDYQ ELVMRTFYLT SIDANTALNM VKTMLKTRDV
FVDERLNTLT MRDTSDAVRM AEKLLQSQDQ SNPEVVLEVE VMEVATSRIL DLGLQWPNTF
GVLSDDGNPV SVLDQLKGIS SSRISIAPAP QAKINAQDKD INTLASPVIR VSNREQARIH
IGQRVPIISA TSVPSTQGPV ITESVTYLDV GLKLEVQPTV HLNNEVAIKV ALEVSNATPL
EATRQGTIPV QVDTRNAQTS LRLHDGETQV LAGLVRNDHN ASGNKIPGLG DIPGLGRLFG
SNKDDMSKSE LVLAITPRIV RNLPYQSPSD MEFSTGTESA MQVRQMAPLP PMDVPGNAPT
TDEPVVDSQM AVAPVNGSPR P
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