| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2288 |
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| Symbol | |
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| ID | 5193434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2607052 |
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| End bp | 2608848 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640586745 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001267611 |
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| Protein GI | 148547509 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0404074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.787377 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGAAG CATTCGATGC AACCCCGGAA TCTGCAAAGC CTGCACCGAC GTCTTCGCGC
GCAGGCCCGC TCCCACAGGA TGTATGCAGC CCACAGACCT GTGATGTACC TGTGGGAGCG
GGCACGCCCG CGAAGAACCC AGCAAAAATT TCCGCCTACC CCCGCGAACT GCTGGCCCAG
GCCCGTCTGC AAGCCACCGA CGAGCGCCTG CTCGACTGCC TGGAACGCCT GGCCTGCGAC
ACCCCCGACA CCTTCACCCA GCGCCTGGGC CTGACCCTGC ATTACCCGGT ACTCGACAGC
CACAGCCTGC TGGCCAGCAC CCCACGCTTC GACAAGCTGG CCTTGGCCCA GTGCCTCAAG
CGCGAATGTG TGCTGATCGA GCAAGGCGGC CAACTGCTGG GCGTGTTCGC CGACCCCTTC
GACCACGCCC GCCTGGCCTG GATCGACGAC GTACTGCAAG GCGCGCCGCT TTACCTGGCC
CACGCCGCCG ACCTGGCCAC CTTTCTGGCC CGTCATGAAG AAAGCTTCCA CGCAGTCGAT
GCCCTTGACC ACGACGCCGA CGCCAGCAGC GAAAGCGACC CGCTGCAACG CCTGTCGCTG
GCCAGTATCA GCGAAGACCA GAGCCGCGTG GTCAAGCTGG TCAACTCCAC CCTGTACGAC
GCCCTCAAGC TGCACGCCAG CGACATCCAC CTGGGCATGA CCGGCCAGGG CCTGACCATC
AAGTACCGCA TCGACGGCGT GCTCAACGGT GCCGGCAAGG CCAGTGGCAG CGCCTTCGCC
GACCAGGTGA TCTCGCGCAT CAAGGTCATG GCCGAGCTGG ACATCGGCGA AAAACGCGTG
CCCCAGGACG GCCGCTTCAA GGTGGCCGTG GGCGACCGGC AAATCGACTT CCGGGTGTCG
ATCATGCCTA GCATCTTCGG TGAAGATGCC GTGCTGCGGG TGCTCGACAA GCAGGACTTG
TCCGACCGGG TCAGCGGCGT GCAACTGCAA GCCTTGGGCT TTGCCGACGA AACCTTGCGC
GCCCTGCGCC GGTTGGCGGC AGAACCCTAC GGCATGATCC TGGTCACCGG CCCTACAGGC
AGCGGCAAGA CCACCACCCT GTACGCCATG ATCAGCGAGA TCAACCATGG CGTGGACAAG
ATCATCACCA TCGAGGACCC GGTCGAGTAT CAACTGCCCG GCGTGCTGCA GATCCCGGTC
AACGAGAAGA AGGGCCTGAC CTTCGCCCGC GGCCTGCGCT CGATCCTGCG TCACGACCCG
GACAAGATCC TGGTCGGTGA AATCCGTGAC CCCGACACGG CCCAGATTGC CGTGCAATCG
GCGCTCACCG GCCATCTGGT GTTCACCACC ATCCACGCCA ACAACGTGTT CGACGTGATT
GGCCGCTTCA GCCAGATGCA GGTCGACCCC TACAGCTTCG TTTCTGCGCT CAACGCGGTG
CTGGCCCAGC GCCTGATTCG CCTGGCCTGC CCGCACTGTG CCACGCCCTG CGAACACGAT
GACGACACCC TGTATGGCTC AGGCCTGACC CGCGAGGGGG TGGCCGGCTG GACATTCGTC
CGCGTCAAGG GCTGCGGCCA CTGCCGTGGC AGTGGTTACC GCGGCCGCAG TGCCATTGCC
GAACTGCTGC ACCTGGATGA CGACCTGCGG CAAATGATCG TGGAGCGCCG CCCGCTGGCG
CAGATCAAGA CGCTTGCCTG CCAGCGCGGC CTGCGCCTGC TGCGAGCCTC GGCCTTGGAC
CTGGTCCGCG ATGGCCGTAC CACCCTTGAG GAGATCAACC GTGTCACATT CATCTGA
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| Protein sequence | MPEAFDATPE SAKPAPTSSR AGPLPQDVCS PQTCDVPVGA GTPAKNPAKI SAYPRELLAQ
ARLQATDERL LDCLERLACD TPDTFTQRLG LTLHYPVLDS HSLLASTPRF DKLALAQCLK
RECVLIEQGG QLLGVFADPF DHARLAWIDD VLQGAPLYLA HAADLATFLA RHEESFHAVD
ALDHDADASS ESDPLQRLSL ASISEDQSRV VKLVNSTLYD ALKLHASDIH LGMTGQGLTI
KYRIDGVLNG AGKASGSAFA DQVISRIKVM AELDIGEKRV PQDGRFKVAV GDRQIDFRVS
IMPSIFGEDA VLRVLDKQDL SDRVSGVQLQ ALGFADETLR ALRRLAAEPY GMILVTGPTG
SGKTTTLYAM ISEINHGVDK IITIEDPVEY QLPGVLQIPV NEKKGLTFAR GLRSILRHDP
DKILVGEIRD PDTAQIAVQS ALTGHLVFTT IHANNVFDVI GRFSQMQVDP YSFVSALNAV
LAQRLIRLAC PHCATPCEHD DDTLYGSGLT REGVAGWTFV RVKGCGHCRG SGYRGRSAIA
ELLHLDDDLR QMIVERRPLA QIKTLACQRG LRLLRASALD LVRDGRTTLE EINRVTFI
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