| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2240 |
|---|
| Symbol | |
|---|
| ID | 5191791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2550648 |
|---|
| End bp | 2551700 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640586697 |
|---|
| Product | ornithine cyclodeaminase |
|---|
| Protein accession | YP_001267563 |
|---|
| Protein GI | 148547461 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.894904 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTATT TCATTGATGT TCCAACCATG TCGGACTTGG TGCATGACAT TGGCGTAGCG
CCGTTTATTG GCGAGCTTGC CGCTGCCCTG CGGGACGATT TCAAACGCTG GCAGGCGTTT
GACAAGTCCG CGCGCGTTGC CAGCCACTCG GAAGTGGGCG TGATCGAACT GATGCCGGTC
GCCGACAAAA GCCGCTATGC CTTCAAATAC GTCAACGGCC ACCCGGCCAA TACTGCACGC
AACCTGCATA CGGTGATGGC CTTCGGTGTA CTGGCCGATG TCGACTCCGG TTACCCGGTG
CTGCTGTCCG AACTGACCAT CGCCACCGCC CTGCGCACCG CAGCGACTTC GCTGATGGCA
GCCCAGGCAC TGGCCCGCCC GAACGCGCGC AAGATGGCGC TGATCGGCAA CGGCGCGCAA
AGCGAATTCC AGGCCCTGGC CTTCCACAAG CACCTGGGCA TCGAAGAAAT CGTCGCCTAC
GACACCGACC CGCTGGCCAC CGCCAAGTTT ATCGCCAACC TCAAGGAATA CAGCGGCTTG
ACCATCCGCC GAGCCAGCTC GGTAGCCGAG GCAGTGAAAG GCGTGGACAT CATCACCACG
GTGACGGCCG ACAAGGCCTA CGCCACCATC ATTACCCCCG ACATGCTGGA GCCCGGTATG
CACCTGAACG CCGTGGGCGG TGACTGCCCA GGCAAAACCG AGCTGCACGC CGATGTGCTG
CGCAACGCAC GGGTGTTCGT CGAGTACGAG CCACAAACCC GTATCGAAGG TGAGATCCAG
CAGTTGCCGG CGGACTTTCC GGTGGTCGAC CTGTGGCGCG TGCTGCGCGG TGAAACCGAG
GGCCGCCAAA GCGACAGCCA GGTCACTGTG TTCGATTCGG TGGGCTTCGC CCTCGAAGAC
TACACCGTAC TACGGTACGT ACTACAGCAA GCCGAAAAGC GCGGGATGGG TGCCAAGATC
GACCTGGTGC CGTGGGTTGA GGACGACCCG AAAGACCTGT TCAGCCACAC CCGAGGCCGC
GCTGGCAAAA GGCGCATCCG ACGGGTTGCC TGA
|
|---|
| Protein sequence | MTYFIDVPTM SDLVHDIGVA PFIGELAAAL RDDFKRWQAF DKSARVASHS EVGVIELMPV
ADKSRYAFKY VNGHPANTAR NLHTVMAFGV LADVDSGYPV LLSELTIATA LRTAATSLMA
AQALARPNAR KMALIGNGAQ SEFQALAFHK HLGIEEIVAY DTDPLATAKF IANLKEYSGL
TIRRASSVAE AVKGVDIITT VTADKAYATI ITPDMLEPGM HLNAVGGDCP GKTELHADVL
RNARVFVEYE PQTRIEGEIQ QLPADFPVVD LWRVLRGETE GRQSDSQVTV FDSVGFALED
YTVLRYVLQQ AEKRGMGAKI DLVPWVEDDP KDLFSHTRGR AGKRRIRRVA
|
|---|
| |