Gene Pput_2204 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2204 
Symbol 
ID5194077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2505735 
End bp2507003 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content64% 
IMG OID640586661 
Productcarbohydrate-selective porin OprB 
Protein accessionYP_001267527 
Protein GI148547425 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3659] Carbohydrate-selective porin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.329498 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCATCCG CAACTCGCAT CACCCCCACC CTGCTGCTGG CCTTGGCCAG CACCACTGCC 
CTTGCCAGCG ACGACCTCAT GACCCGCAGC ACCCTGACCG GTGACTGGGG CGGCCTGCGC
CATCAACTCG AAGAAGATGG CGTCAAGATC ACCGGCGACT ACAGCGGTGA AACCGCCTAC
AACGCCCACG GTGGCCTGCA CCGTTCGGCG CGCTATTCGC AGAACGTCAA GCTGGGTGTG
CAGTTCGACC TGTCGAAACT GTACGGTCTG GACAACGGCG GCAAGGTCCA GCTGACCATC
AACGACCGTC GCGGTAACAG CGCCTCGGAA GACCTGGTAG GCAACCGCCT GCCAATCCAG
GAAAACTTCG GCGGCCTGTA CACCCGCCTG ACCGAGCTGA GCTACGAGCG CACGCTGTTC
ACCCCGGCGC TCAACGTCAA GCTCGGCTAC ATGGCCATGG GCAACGACCT CGGCGGCCTG
GACAGCGGCA TCCTGTGCAA CTTCATGAAC GCCGGCTTCT GCGGCCACCC GCTGAACATG
TCCGGCGGCA GTGGCTGGAC CAACTACCCC AACGCCCACC TCGGCGTGCG GGTGAAGTAC
GACCTGTCAC CTGCCTGGCA ACTGCGCGTG GCGGCGTTCA ACGTCGACCC CGAGAGCAAC
GGCAACTCCA GCCGCGCCTG GCACCTGGGG CCCAAGCACA CCACCGGCAC CGTGGTACCG
GTAGAACTGG TATACAAGCT GCAGGGTGAA CTGCCAGGCG AGTACAAGCT TGGCTACTAC
TACGACAGCT CTGATGTGAA ACGCATCGGC AGCGATGATG AAGTGTCGGG TCGGGGTGGC
CATTACCTGC TGGTCGACCA GGCGGTGTGG AACGACCAGG CCTCCCCAGG CCGAAGCCTG
CACGCCTTCG GCCAGTACTC GGCGTCGAGC AAGGCCGCTT CGCCGTTCAC CAAGTGGTAT
GGCGCCGGCG TGGTGTTGTA CAAGCCATTC GAAGGCCGCC CGAAGGATAC CGTGGCACTG
GGTTACGGCC GCGCCGTGCC CAACCCGCGT AGCCGCGATG TGCTGGAGGA TGCCGCGTTC
AACGCGGGCC AGCAGTTCCC GGACATCGAC AGCGCAGAGC AGTTGATCGA ACTGAGCTAC
GGCTACCAGG CCACGCCATG GCTGAACCTG CGCCCGGATG TGCAATACAT CATCGAGCCA
GGGGCGTTTT CGGGCAAAGA CATCGACAAT GCACTGGTGG TTGGCCTGCA GGTCAAGGCG
ACCTTCTGA
 
Protein sequence
MPSATRITPT LLLALASTTA LASDDLMTRS TLTGDWGGLR HQLEEDGVKI TGDYSGETAY 
NAHGGLHRSA RYSQNVKLGV QFDLSKLYGL DNGGKVQLTI NDRRGNSASE DLVGNRLPIQ
ENFGGLYTRL TELSYERTLF TPALNVKLGY MAMGNDLGGL DSGILCNFMN AGFCGHPLNM
SGGSGWTNYP NAHLGVRVKY DLSPAWQLRV AAFNVDPESN GNSSRAWHLG PKHTTGTVVP
VELVYKLQGE LPGEYKLGYY YDSSDVKRIG SDDEVSGRGG HYLLVDQAVW NDQASPGRSL
HAFGQYSASS KAASPFTKWY GAGVVLYKPF EGRPKDTVAL GYGRAVPNPR SRDVLEDAAF
NAGQQFPDID SAEQLIELSY GYQATPWLNL RPDVQYIIEP GAFSGKDIDN ALVVGLQVKA
TF