Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2204 |
Symbol | |
ID | 5194077 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 2505735 |
End bp | 2507003 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640586661 |
Product | carbohydrate-selective porin OprB |
Protein accession | YP_001267527 |
Protein GI | 148547425 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.329498 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCATCCG CAACTCGCAT CACCCCCACC CTGCTGCTGG CCTTGGCCAG CACCACTGCC CTTGCCAGCG ACGACCTCAT GACCCGCAGC ACCCTGACCG GTGACTGGGG CGGCCTGCGC CATCAACTCG AAGAAGATGG CGTCAAGATC ACCGGCGACT ACAGCGGTGA AACCGCCTAC AACGCCCACG GTGGCCTGCA CCGTTCGGCG CGCTATTCGC AGAACGTCAA GCTGGGTGTG CAGTTCGACC TGTCGAAACT GTACGGTCTG GACAACGGCG GCAAGGTCCA GCTGACCATC AACGACCGTC GCGGTAACAG CGCCTCGGAA GACCTGGTAG GCAACCGCCT GCCAATCCAG GAAAACTTCG GCGGCCTGTA CACCCGCCTG ACCGAGCTGA GCTACGAGCG CACGCTGTTC ACCCCGGCGC TCAACGTCAA GCTCGGCTAC ATGGCCATGG GCAACGACCT CGGCGGCCTG GACAGCGGCA TCCTGTGCAA CTTCATGAAC GCCGGCTTCT GCGGCCACCC GCTGAACATG TCCGGCGGCA GTGGCTGGAC CAACTACCCC AACGCCCACC TCGGCGTGCG GGTGAAGTAC GACCTGTCAC CTGCCTGGCA ACTGCGCGTG GCGGCGTTCA ACGTCGACCC CGAGAGCAAC GGCAACTCCA GCCGCGCCTG GCACCTGGGG CCCAAGCACA CCACCGGCAC CGTGGTACCG GTAGAACTGG TATACAAGCT GCAGGGTGAA CTGCCAGGCG AGTACAAGCT TGGCTACTAC TACGACAGCT CTGATGTGAA ACGCATCGGC AGCGATGATG AAGTGTCGGG TCGGGGTGGC CATTACCTGC TGGTCGACCA GGCGGTGTGG AACGACCAGG CCTCCCCAGG CCGAAGCCTG CACGCCTTCG GCCAGTACTC GGCGTCGAGC AAGGCCGCTT CGCCGTTCAC CAAGTGGTAT GGCGCCGGCG TGGTGTTGTA CAAGCCATTC GAAGGCCGCC CGAAGGATAC CGTGGCACTG GGTTACGGCC GCGCCGTGCC CAACCCGCGT AGCCGCGATG TGCTGGAGGA TGCCGCGTTC AACGCGGGCC AGCAGTTCCC GGACATCGAC AGCGCAGAGC AGTTGATCGA ACTGAGCTAC GGCTACCAGG CCACGCCATG GCTGAACCTG CGCCCGGATG TGCAATACAT CATCGAGCCA GGGGCGTTTT CGGGCAAAGA CATCGACAAT GCACTGGTGG TTGGCCTGCA GGTCAAGGCG ACCTTCTGA
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Protein sequence | MPSATRITPT LLLALASTTA LASDDLMTRS TLTGDWGGLR HQLEEDGVKI TGDYSGETAY NAHGGLHRSA RYSQNVKLGV QFDLSKLYGL DNGGKVQLTI NDRRGNSASE DLVGNRLPIQ ENFGGLYTRL TELSYERTLF TPALNVKLGY MAMGNDLGGL DSGILCNFMN AGFCGHPLNM SGGSGWTNYP NAHLGVRVKY DLSPAWQLRV AAFNVDPESN GNSSRAWHLG PKHTTGTVVP VELVYKLQGE LPGEYKLGYY YDSSDVKRIG SDDEVSGRGG HYLLVDQAVW NDQASPGRSL HAFGQYSASS KAASPFTKWY GAGVVLYKPF EGRPKDTVAL GYGRAVPNPR SRDVLEDAAF NAGQQFPDID SAEQLIELSY GYQATPWLNL RPDVQYIIEP GAFSGKDIDN ALVVGLQVKA TF
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