| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2188 |
|---|
| Symbol | |
|---|
| ID | 5190280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 2484787 |
|---|
| End bp | 2487894 |
|---|
| Gene Length | 3108 bp |
|---|
| Protein Length | 1035 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640586645 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_001267511 |
|---|
| Protein GI | 148547409 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.252865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGT CCGGGCCTTT CATCCGTCGC CCGGTGGCGA CCATGCTGTT GAGCCTGGCA
ATCATGCTGC TGGGAGGGGT CAGCTTTGGC TTGCTACCGG TGGCGCCACT GCCGCAAATG
GACTTCCCGG TGATCGTGGT GTCGGCGAAC CTCTCTGGTG CCAGCCCCGA GGTCATGGCG
TCCACCGTGG CCACACCGCT GGAACGCAAG CTGGGCAGCA TCGCCGGCGT CACCACGCTC
ACCAGCAGCT CCAACCAGGG GTCGACACGG GTAATCATCG GCTTCGAGAT GGGCCGTGAC
ATCGATGGCG CAGCCCGTGA GGTGCAAGCG GCGATCAACG CTACCCGCAA CCTGCTGCCC
AGTGGCATGC GCAGCATGCC CACCTACAAG AAGATCAACC CGTCGCAGGC GCCGATCATG
GTGCTGTCAC TGACTTCGGA TGTGTTGCAG AAGGGCCAGC TGTATGACCT GGCCGACACC
ATCCTTTCAC AGAGCCTGGC TCAGGTATCG GGGGTAGGGG AGGTGCAGAT CGGCGGCAGT
TCGCTGCCTG CCGTGCGCAT TGCCGTCGAG CCGCAACTGC TCAACCAGTA CAACCTGTCG
CTGGACGAAG TGCGCACCGC CGTGTCCAAC GCCAACCAGC GCCGGCCCAT GGGCTTTGTC
GAGGACACCG AGCGCAACTG GCAGGTGCGG GCCAACGACC AGCTGGAAAG TGCCAAGGAT
TACGAGCCGG TGGTGATTCG CCAGCAGAAC GGCACCATTC TGCGCCTGTC TGACGTGGCG
ACGGTCACCG ACGGCGTTGA AAACCGTTAC AACAGCGGCT TCTTCAACGA CCAGGCAGCG
GTGTTGCTGG TGGTCAACCG CCAGAGCGGC GCCAACATCA TCGAAACGGT CGACCAGATC
AAGGCGCAGC TACCGGCATT GCAGTCGTTG CTGCCCGCCA GCGTGCAACT GAACGTGGCC
ATGGACCGCT CGCCCGTGAT CAAGGCCACC CTCAAAGAGG CCGAGCACAC CCTGCTGATC
GCCGTGGTGC TGGTGATCCT GGTGGTCTAC CTGTTCCTCG GCAGCCTGCG CGCCTCGCTG
ATCCCCAGCC TGGCGGTGCC GGTATCGCTG GTGGGTACGT TCGCAGTCAT GTACGTGTGC
GGTTTCTCGC TCAACAACCT GTCGCTGATG GCGCTGATCC TTGCCACCGG GCTGGTGGTG
GACGATGCCA TCGTGGTGCT GGAAAACATC TCCAGGCACA TCGAGAACGG CCAGCCACCT
ATGAAGGCGG CCTTCCTGGG CGCCAAGGAG GTGGGCTTCA CCTTGCTGTC GATGAACGTA
TCGCTGGTGG CGGTGTTCGT CTCCATCCTG TTCATGGGCG GCATCGTGCG CAACCTGTTC
CAGGAGTTTT CCATCACCCT GGCGGCGGCG ATCATCGTCT CGCTGGTGGT GTCGCTCACC
CTTACACCGA TGCTCTGCGC CCGCTGGCTC AAGCCGCACC AGGCCCAGCA GACACGCCTG
CAGCGCTGGA GCGACAAGCT GCATCAGCGC ATGGTTGCTG CCTATGACCG CAGCCTGGGC
TGGGCCCTGC GCCACAAGCG CCTGACCCTG CTCAGCCTGT TGGCCACCAT CGGCATCAAC
ATCGCCCTGT ACGTGGTGGT GCCCAAGACG CTGATACCCC AGCAGGATAC CGGCCAGTTG
ATGGGCTTCA TCCGGGGTGA CGACGGCCTG TCGTTCACGG TGATGCAGCC GAAGATGGAA
ATCTACCGCC GCGCCTTGCT GGCCGACCCG GCAGTACAGA GCGTTGCCGG TTTCATCGGT
GGCAACAGCG GTACCAACAA CGCCATGGTG CTGGTGCGCC TGAAACCGAT CAGCGAGCGC
AAGATCGATG CGCAGAAGGT GATCGAGCGC CTGCGCAAGG AGCTGCCCAA AGTGCCGGGC
GGGCGCCTGT TCCTGATGGC CGACCAGGAC CTGCAACTGG GTGGCGGTGG GCGTGACCAG
ACCTCCTCTC AGTACCTGTA TACCCTGCAA AGTGGCGACC TGGCGGCGTT GCGCGAATGG
TTCCCCAAGG TGGTCGCGGC GCTGCGTGCA CTGCCTGAGC TGACCGCCAT TGACGCCCGC
GATGGTGCCG GTACCCAACA GGTGACGCTG GTGGTCGACC GTGACCAGGC CAAGCGCCTG
GGCATCGACA TGGACATGGT CACCGCAGTA CTGAACAACG CCTACAGCCA GCGGCAGATC
TCCACCATCT ACGACAGCCT CAACCAGTAC CAGGTGGTGT TGGAGATCAA CCCGAAATAC
GCCTGGGACC CGAGCACGCT GGAGCAAGTG CAGGTGATCA CCGCCGACGG CGCCCGGGTA
CCGCTGTCGA CCATCGCCCA CTACGAGAAC AGCCTGGCCA ACGACCGGGT CAGCCACGAA
GGCCAGTTCG CCTCGGAAGA CATCGCCTTC GACGTCGCCG AGGGCTACAG CCCCGATCAG
GCCATGGCGG CACTGGAGCG CGCGGTGGCC AAACTGGGGC TGCCCGAGGA GGTGATTGCC
AAGCTCGGCG GCACTGCCGA TGCCTTTGCC CAGACCCAGC AGGGCCAGCC ATTCATGATC
CTTGGCGCAC TGCTGCTGGT GTACCTGGTG CTGGGCATTC TGTATGAAAG CTACATTCAC
CCGCTGACCA TTCTCTCGAC ACTGCCTTCG GCGGGCGTCG GTGCCTTGCT GGCACTTTAC
GTCACCGGTG GCGAGTTCAG CCTGATCTCG TTGCTGGGGC TGTTCCTGTT GATTGGGGTG
GTGAAAAAGA ATGCCATCCT GATGATCGAC CTGGCCTTGC AGCTGGAGCG CCATCAGGGC
TTTTCGCCGG AAGAGTCGAT CCGCCGGGCC TGCCTGCTGC GCCTGCGGCC GATCCTGATG
ACCACCCTGG CGGCGATCCT TGGCGCATTG CCGTTGCTGC TGAGCCAGGC TGAAGGCGCA
GAAATGCGTC AGCCGCTGGG CCTGACCATC ATCGGTGGCC TGGTGTTCAG CCAGATCCTC
ACCCTTTATA CGACGCCGGT GGTTTACCTG TACCTAGACC GCCTGCGCCA CCGTTTCAAC
CGTTGGCGCG GCGTGCGCAC CGACGCCGCC CTGGAAACCC CGCTATGA
|
|---|
| Protein sequence | MNLSGPFIRR PVATMLLSLA IMLLGGVSFG LLPVAPLPQM DFPVIVVSAN LSGASPEVMA
STVATPLERK LGSIAGVTTL TSSSNQGSTR VIIGFEMGRD IDGAAREVQA AINATRNLLP
SGMRSMPTYK KINPSQAPIM VLSLTSDVLQ KGQLYDLADT ILSQSLAQVS GVGEVQIGGS
SLPAVRIAVE PQLLNQYNLS LDEVRTAVSN ANQRRPMGFV EDTERNWQVR ANDQLESAKD
YEPVVIRQQN GTILRLSDVA TVTDGVENRY NSGFFNDQAA VLLVVNRQSG ANIIETVDQI
KAQLPALQSL LPASVQLNVA MDRSPVIKAT LKEAEHTLLI AVVLVILVVY LFLGSLRASL
IPSLAVPVSL VGTFAVMYVC GFSLNNLSLM ALILATGLVV DDAIVVLENI SRHIENGQPP
MKAAFLGAKE VGFTLLSMNV SLVAVFVSIL FMGGIVRNLF QEFSITLAAA IIVSLVVSLT
LTPMLCARWL KPHQAQQTRL QRWSDKLHQR MVAAYDRSLG WALRHKRLTL LSLLATIGIN
IALYVVVPKT LIPQQDTGQL MGFIRGDDGL SFTVMQPKME IYRRALLADP AVQSVAGFIG
GNSGTNNAMV LVRLKPISER KIDAQKVIER LRKELPKVPG GRLFLMADQD LQLGGGGRDQ
TSSQYLYTLQ SGDLAALREW FPKVVAALRA LPELTAIDAR DGAGTQQVTL VVDRDQAKRL
GIDMDMVTAV LNNAYSQRQI STIYDSLNQY QVVLEINPKY AWDPSTLEQV QVITADGARV
PLSTIAHYEN SLANDRVSHE GQFASEDIAF DVAEGYSPDQ AMAALERAVA KLGLPEEVIA
KLGGTADAFA QTQQGQPFMI LGALLLVYLV LGILYESYIH PLTILSTLPS AGVGALLALY
VTGGEFSLIS LLGLFLLIGV VKKNAILMID LALQLERHQG FSPEESIRRA CLLRLRPILM
TTLAAILGAL PLLLSQAEGA EMRQPLGLTI IGGLVFSQIL TLYTTPVVYL YLDRLRHRFN
RWRGVRTDAA LETPL
|
|---|
| |