Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2103 |
Symbol | |
ID | 5193135 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 2378662 |
End bp | 2380005 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640586560 |
Product | outer membrane porin |
Protein accession | YP_001267426 |
Protein GI | 148547324 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.262229 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTGCA GATCACCCCT GACACTGGCT GCTTGCCTGG CGCTGGCCGG CGTTGGCAGC CAGGTTGTTG CTGCAGAAAA AAGTGCGGAC GGCTTCATGG AGGGCAGCAC CCTCAGCGTG CTTAACCGCA ACTTCTACTT CAACCGCGAT AATCGCGATT CTGTGGCCCC CACACACAAC CCGAGCAAAC AACCTGACAA CGGCTACTCC GAGGCCTGGG GGCACGCCGT GATTACCCGA TTCGAGTCGG GCTTCACCCA GGGCACCGTA GGTGTTGGCC TGGATGCGTT TGCCATGCTT GGCCTCAAGC TCGACACGGG CGGCGGCCGC AACGGCGGGC GCAGTTCTTT CGACGTATTG CCGGTTGACC GCGACGGCCA GGCGCGTGAC GAATACACCA AGGTGGGGGG CGCGGCCAAG CTACGACTGT TCGACACGGT ACTGAAGGTG GGTGATGTGT TCCCAGCCAA CCCGGTGGTG GCGGCTGGCG ACTCGCGGCT GCTGCCGGAA AGCTTCCGTG GGGTGACCCT GGAGAACACC AGCATCAAGG ACCTTACCCT GCAAGCCGGG CGTCTGCATG CCATGAGCCA GCCGATGTCC AGCGACCTGC GGGAGAACTT CGTGACCTTC TATGGCGGCC CGGTCGATTC GCCCTGGATC GCCTATGGTG GGGGGGATTA CAGGCTCAAT GAGCATGTCA GCGTCAGCCT GTTCAGTAGC CGGCTCAAGG ACGCGTGGAA CCAGTACTAC GCCGGCACCA GCCTGAGTTG GCCACTGAGC GAGGCGCTGG CGCTGATTGG CGGTTTCAAC TATTACAAGG CTGTGGATGA AGGGCAGCAG CGCCTGGGCG CCTTTGACAA CGACATCTGG AGCGCCAAGC TGGGTGTGCG CTTTGGTGCT CACACCCTGG CCCTGACGCA CCAGCGCAAC AACGGCGACG ACGACTTCGA CTACCTGCGC CAGTCCGACT CGATCTTCCT CGACAACTCC ATCCAGTACA GCGACTTCAA CGCGCCCAAG GAGCGTTCGT GGATGCTGCG TTATGACCTG AACATGGCCG CCTACGGCGT ACCCGGGTTG TCGTTCATGA CACGCTACGG CAAGGGTACC GATGCTGACT ACTCCAATGC CAACGCCACC TACATGCGCC GTGACGTTGC GGGCAACCCG CTGACCGACC AGAAACGCTG GGAGCGTGAC ATCGAGGTGA AGTATGTGGT GCAGACGGGC GCGGCCAAGG ACCTGTCGTT GCGGGTTCGC CAGGCCACCA CCCGGGCCAC GGCGTTCGAG TCGGACCTGG ACGAAGTGCG GCTGATCGTG GAGTACCCGT TGTCGATTCT GTGA
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Protein sequence | MTCRSPLTLA ACLALAGVGS QVVAAEKSAD GFMEGSTLSV LNRNFYFNRD NRDSVAPTHN PSKQPDNGYS EAWGHAVITR FESGFTQGTV GVGLDAFAML GLKLDTGGGR NGGRSSFDVL PVDRDGQARD EYTKVGGAAK LRLFDTVLKV GDVFPANPVV AAGDSRLLPE SFRGVTLENT SIKDLTLQAG RLHAMSQPMS SDLRENFVTF YGGPVDSPWI AYGGGDYRLN EHVSVSLFSS RLKDAWNQYY AGTSLSWPLS EALALIGGFN YYKAVDEGQQ RLGAFDNDIW SAKLGVRFGA HTLALTHQRN NGDDDFDYLR QSDSIFLDNS IQYSDFNAPK ERSWMLRYDL NMAAYGVPGL SFMTRYGKGT DADYSNANAT YMRRDVAGNP LTDQKRWERD IEVKYVVQTG AAKDLSLRVR QATTRATAFE SDLDEVRLIV EYPLSIL
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