| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2057 |
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| Symbol | |
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| ID | 5190448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2326974 |
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| End bp | 2329073 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640586515 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001267381 |
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| Protein GI | 148547279 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTCA CAGCAAACCC CGACATCATG TACCGGCTGT TGATCCAGAG CGTGGTGGAT
TATGCCATCT ACCTGCTCAC CCCTGAAGGT ATCGTCGCCA ACTGGAACCC CGGCGCCCAG
CGCGCCAAGG GGTACCGTGC CGAGGAAATC GTCGGCCAGC ATTACTCGTT GTTCTACACC
GATGCCGAGC GCGTAGCCGG GTTGCCGGCG TTAAACCTGG AGCAGGCGCG CAGCACCGGA
CGCTTTGAAG AAACGGGCGC ACGCCTGCGC AAGGACGGGA CGGTCTTCCA CGCCCATGTG
GTCATCGAAG CGGTGTACGA CGATACCGGG CAACTGGTGG GTTTCGCCAA GGTCACCCGC
GACATTTCCG AACGCCACCG CCAGGAGCTC GAACTGCTGC AGGCCAAAGA GCTGGCCGAG
CAGTACAGCC AGGAAATGGC CAAGCTTTCG CAGTTTCTCG ATTCGGTGAT TGCCAACATT
CCCGCGAGCG TCATCGTCCA GGACCTGGAA AGCCAGCGCA TCTTGTTGGC CAACCAGCAG
GCCGAACGCC TGTTCGGCGG GCCGCAGCGC AGCATGATCG GCCAGTTGCC CAGGGAATGC
CTGGCACCGG CTGCCGGTGA CTACCTGGAG CAGCAATTCG TGCGGGGTGC CCGCAGCACC
AAGGGGCACG CCGCCGAAAC CCGCGTCGAC ACCGCCCGCG GCCCACGCAC CCTGCGCAGC
CGTACCCTGC TCAGTCAAAA CCGCGAAGGG CAGGCCGATT ACGTGTTGTT CGTGGCTGAA
GACGCCACCG AAGAGCTGGC CGCCCATGCG CAGATCCATC ACATGGCGCA CCATGACGCG
CTCACCGGGC TGCCCAACCG TACGCTGTTC CACGAACGGC TACGCCAGGC CCTGTTGCGC
GGCAGCGAAA ATGCCAAGCT GACCGCTGCC CTGTGCCTGG ACCTGGACAA CTTCAAGAAC
ATCAACGACT CCCTTGGCCA TGCGTTTGGT GACAAGTTGC TACGCGAGTT GGGCAAGCGT
CTGCGCCGTG AACTGCGTGA GCACGACACC TTGGCCCGCC TGGGTGGCGA CGAGTTTGCC
GTGGTGCTGA CGGGCCTGGA GGGGCGGGAT GCCGCGTGTA ATACCGCGCA GCGCCTGATC
AAGGCCATCA GCCCGCCATT CCAGATCGAA GGGCATCAGT TCGTGGTGGG GGTGAGCATC
GGCATCGCCA TCGCGCCTGA TGACAATGAC CAGGCAGAGC AACTGTTGGG GTACGCCGAC
ATGGCCCTGT ACCAGGCCAA GCGTAACGGC CGTAATCGTT ATGAATGCTT CGATGTCGAA
CTGGACGTTG CCGCCCGCCA GCGCCGCCTG GTGGAAACCG ACCTGCGCAC AGCGCTGCAC
CTGGGGCAGT TGCAGCTGCA CTACCAGCCG GTAGTCGATC ATCAGACCAG CAGCGTTACC
GGTTATGAGG CGCTGCTGCG CTGGGAACAC CCGACCCGTG GCATGGTCAT GCCGATGGAC
TTCATCCCCA TTGCCGAAGA AACCGGGTTG ATCCACGAGC TGGGCAACCG TGCGCTGAAT
CTGGCTTGCC AGGAGGCGGC CAGTTGGGAC AGTGAGCAGA CGGTGTCGGT CAACCTGTCG
GCGGTGCAGT TCAAGAACGG CGATCTGGTG CATACCGTCG CCCTCGCGCT GGCCGACTCG
GGCCTGCCGC CGCAGCGGCT GGAGCTGGAA ATTACCGAGT CGGTACTGCT GGGCAACAGC
GAGGAAAACG TGCGCACCTT GCGCGCACTG AAAGACCTGG GCGTGTCCAT TTCACTGGAT
GACTTTGGTA CTGGCTACTC ATCGCTGGGT TACCTGCGTT CATTCCCGTT CGACCGGATC
AAGATCGACA AGTCGTTCGT GCATGACATG TGCGACAGCC GCGAGGCCAT GTCGATCATT
CGCGCCATTA CCGAGCTGTC CAACAGCCTG ATGATCAAGA CCACGGCTGA AGGCGTGGAG
TCGGAGGAGC AGATGCGCCG GCTCGCGGCG GAAGGCTGTT CGCACTTCCA GGGCTACTTT
TATGGGCGGC CGGCACCGGC GAGCGAGCGG TTGAAGCAGG TCATCACGCA AGAACAATGA
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| Protein sequence | MSLTANPDIM YRLLIQSVVD YAIYLLTPEG IVANWNPGAQ RAKGYRAEEI VGQHYSLFYT
DAERVAGLPA LNLEQARSTG RFEETGARLR KDGTVFHAHV VIEAVYDDTG QLVGFAKVTR
DISERHRQEL ELLQAKELAE QYSQEMAKLS QFLDSVIANI PASVIVQDLE SQRILLANQQ
AERLFGGPQR SMIGQLPREC LAPAAGDYLE QQFVRGARST KGHAAETRVD TARGPRTLRS
RTLLSQNREG QADYVLFVAE DATEELAAHA QIHHMAHHDA LTGLPNRTLF HERLRQALLR
GSENAKLTAA LCLDLDNFKN INDSLGHAFG DKLLRELGKR LRRELREHDT LARLGGDEFA
VVLTGLEGRD AACNTAQRLI KAISPPFQIE GHQFVVGVSI GIAIAPDDND QAEQLLGYAD
MALYQAKRNG RNRYECFDVE LDVAARQRRL VETDLRTALH LGQLQLHYQP VVDHQTSSVT
GYEALLRWEH PTRGMVMPMD FIPIAEETGL IHELGNRALN LACQEAASWD SEQTVSVNLS
AVQFKNGDLV HTVALALADS GLPPQRLELE ITESVLLGNS EENVRTLRAL KDLGVSISLD
DFGTGYSSLG YLRSFPFDRI KIDKSFVHDM CDSREAMSII RAITELSNSL MIKTTAEGVE
SEEQMRRLAA EGCSHFQGYF YGRPAPASER LKQVITQEQ
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